Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01030 ATGAAAAACAAGACCCATTTCATAAAGCTTGAAACTTTGGCCATTTTCCTATCTGGGTTTTTCTTCATAGTTCATTTTGTGAACTCACAGGACGATGCTTCTGTAATGTTAGCTCTGAAGAACAACCTTAACCCACCAGAATCACTCGGATGGTCCGACCCGGATCCATGCAAGTGGAAATACGTGGCATGCTCCGATGAAAAAAGGGTTACCCGGATCCAAATCGGTCGCCAAAACTTGCAAGGCAGACTCCCTGATACACTTCAGAAGCTTTCGGAGTTGCAACACTTGGAGCTTCAATTCAACAACCTCTCGGGTCCACTTCCAAGCCTAAACGGGTTGAGTTCGTTACAAGTGTTCATGGCTAGTAATAACCGTTTCACCACAATCCCCGGCGACATTTTCGCCGGCATGTCTCAGCTTCTGTCCGTGGAGATCGATGATAACCCCTTTGAGCCTTGGGAGATACCTCAAAGTCTCCGAAATGCTTCAGCTCTTCAGAACTTTTCTGCTAACTCAGCTAACATCAAAGGTAAGGTTCCAGATTTTTTTGGTGCTGACGTGTTCCCTGGTTTGACCCTTTTGCATTTAGCCTTCAACAACCTTGAAGGTGGGTTACCCTTGAGTTTTTCTGGGTCACAGATTGAGTCTTTGTGGTTGAATGGCCAAAAGAGTGATGGGAAGCTTGGTGGGACTGTTGATGTTTTGCAAAACATGACTTCGTTGACAGAGGTTTGGTTGCAATCCAATGCTTTTACTGGTCCTTTGCCAGATTTTTCAGGGTTGAAAAGTTTGCAAGTTTTGAACTTGAGGGATAACTCATTCACTGGTCCTGTTCCTAGTTCATTGGTGAGCCTTAAATCACTTAAAGTTGTGAACATGACTAATAACTTGTTTCAGGGTCCAATGCCAGTGTTTGGTGATGGGGTTGAGATTGATAATGTTAAGGATTCTAATAACTTTTGCTTGCCTAGTCCCGGTGATTGTGATCCTAGGGTGATGGTTCTTCTTTCTGTTGTTAAGCTTATGGGTTATCCTAAAAGGTTTGCTGAGAGTTGGAAGGGGAATGATCCTTGTGTTGATTGGATTGGGATTACTTGTAGTGATGGTAATATTACTGTTGTTAATTTTCAGAAGATGGGTCTCACTGGTATGATATCACCAGAGTTTGCTAAGCTCAAGTCACTTCAAAGAATAGTGCTTGCTGATAACAATCTCACTGGTTCAATTCCACAGGAGCTTACTACTTTGCCTGTGCTTACTCAATTAAATGTTGCAAACAATAAGCTCTATGGAAAAGTACCAAGTTTTAGGAGCAATATAGTTGTCACCACAAATGGTAACAATGATATAGGGAAGGATAAAAGCAGCCAATCCCCTAAGGGTCCAATGTCTCCAACAGTTCCCAACGCAAGTGGAGAAAATGGTAGGAGTTCTGGAAACAGTGGAAAAAAGTCATCTTCCCATGTAGTAGTAATTGTGTCTGTTGTGATTGGGGCTGTATTTCTAGTTTCCTTGATTGGTTTCTTAGTTTTTTGCTTGCTTAGGATGAGGCAAAAGCAGTTGACCAGGGTCCAAAGCCCAAATGCACTAGTTATTCACCCTAGGCATGCTGGATCAGATAATGAGAGTGTAAAGATAACAGTTGCAAGTTCAAGTGTCAGTGGTGGTGGTGTTAGTGAAACCCAAACTGTACCTAGCAGTGAGGCAGGAGATATTCAAATGGTTGAATCGGGAAACATGGTCATTTCTATACAAGTCCTGAAGAATGTTACTAACAATTTCAGTGAGAAAAATATACTGGGACAAGGAGGTTTTGGAACAGTTTATAAAGGTGAACTCCATGATGGTACAAGAATTGCAGTGAAAAGAATGGAGTCTGGGGCAATAACTGGGAAAGGTGTAGCAGAATTTAAGTCTGAAATTGCTGTTTTAACAAAGGTTCGTCACCGACATCTTGTTGCTCTTCTAGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTACGAGTACATGCCTCAAGGGACACTTAGTAGGCATCTTTTTAACTGGCCAGAGGAAGGACTAGAACCCACTAGAATGGAATAG 2091 0.4228 MKNKTHFIKLETLAIFLSGFFFIVHFVNSQDDASVMLALKNNLNPPESLGWSDPDPCKWKYVACSDEKRVTRIQIGRQNLQGRLPDTLQKLSELQHLELQFNNLSGPLPSLNGLSSLQVFMASNNRFTTIPGDIFAGMSQLLSVEIDDNPFEPWEIPQSLRNASALQNFSANSANIKGKVPDFFGADVFPGLTLLHLAFNNLEGGLPLSFSGSQIESLWLNGQKSDGKLGGTVDVLQNMTSLTEVWLQSNAFTGPLPDFSGLKSLQVLNLRDNSFTGPVPSSLVSLKSLKVVNMTNNLFQGPMPVFGDGVEIDNVKDSNNFCLPSPGDCDPRVMVLLSVVKLMGYPKRFAESWKGNDPCVDWIGITCSDGNITVVNFQKMGLTGMISPEFAKLKSLQRIVLADNNLTGSIPQELTTLPVLTQLNVANNKLYGKVPSFRSNIVVTTNGNNDIGKDKSSQSPKGPMSPTVPNASGENGRSSGNSGKKSSSHVVVIVSVVIGAVFLVSLIGFLVFCLLRMRQKQLTRVQSPNALVIHPRHAGSDNESVKITVASSSVSGGGVSETQTVPSSEAGDIQMVESGNMVISIQVLKNVTNNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMESGAITGKGVAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLEPTRME* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01030 696 FunFam Receptor-like kinase TMK4 30 327 - -
Rops9g01030 696 FunFam receptor protein kinase TMK1 557 672 - -
Rops9g01030 696 Pfam Protein tyrosine and serine/threonine kinase 598 683 IPR001245 GO:0004672|GO:0006468
Rops9g01030 696 SMART LRR_typ_2 189 212 IPR003591 -
Rops9g01030 696 SMART LRR_typ_2 393 417 IPR003591 -
Rops9g01030 696 SMART LRR_typ_2 114 137 IPR003591 -
Rops9g01030 696 SMART LRR_typ_2 262 286 IPR003591 -
Rops9g01030 696 PANTHER OSJNBA0070M12.3 PROTEIN 16 692 - -
Rops9g01030 696 FunFam Leucine-rich repeat receptor-like kinase 331 454 - -
Rops9g01030 696 SUPERFAMILY L domain-like 40 323 - -
Rops9g01030 696 Gene3D Ribonuclease Inhibitor 331 455 IPR032675 -
Rops9g01030 696 Gene3D Ribonuclease Inhibitor 28 329 IPR032675 -
Rops9g01030 696 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Rops9g01030 696 Pfam Leucine rich repeat N-terminal domain 336 368 IPR013210 -
Rops9g01030 696 SUPERFAMILY L domain-like 332 440 - -
Rops9g01030 696 SUPERFAMILY Protein kinase-like (PK-like) 573 686 IPR011009 -
Rops9g01030 696 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Rops9g01030 696 ProSiteProfiles Protein kinase domain profile. 595 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01030 696 MobiDBLite consensus disorder prediction 448 485 - -
Rops9g01030 696 Gene3D Phosphorylase Kinase; domain 1 556 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01030 Rops-Chr9 16895112 16897481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01030 73 684 Receptor kinase-like Gene Family AT4G08850 26.837 2.60e-47 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Rops9g01030 PK_Tyr_Ser-Thr 2.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01030 K00924 - gmx:100789646 1047.34