Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01024 ATGATGAGTGCTTCTTCCTCCAGAAAAATGACCAAGGATGAGCAAGTGGCCCAATGTGAAGTCCAAGAACCAAGGTGGCTTGAGGATTTTCTGGAAAAAACTTTCTTTGACTCCTGTGATGCTCATCCAGTTCGTAGGAATGAGTTAAATAAATACTGTATAAACTGCAACCTGTCAGCTTGCCAATACTGTCTATCATCAGGTCCTCATCGCCATCACAAGATACTTAAAATCTATAGACATGTTTACAAAGATGTTGTCTCGCTTGCTGCTATGGAAAAGTATATTGACTGCTCACAAATCCAGCCCTACAAGTGTAACAAGCGACTGGTTATTGCTCTGAACCCTCTCCCACACTGTGGTTCGGCGTTAAATAATGAGGCATCATGCAACATCTGCAGTAGAAAGTTGACTGAACCTGATTTATATCGCTACTGCTCCATTTCGTGCAAGGTCAAAGCTGTTTCAAGAAAGCCTAATGATTCAGCTCCTCCCTTCATTTCCATCCAGAGTCCTCCTCCTGAGGAAAGACAGGCTCCTGAGGAAAGACAGGAGGAAACTTCTGAACCCCCAAAGCGAAAAAGGAGAAGAAAGGGGACACCCCACAGAGCTCCCTTCTTCTAA 624 0.4407 MMSASSSRKMTKDEQVAQCEVQEPRWLEDFLEKTFFDSCDAHPVRRNELNKYCINCNLSACQYCLSSGPHRHHKILKIYRHVYKDVVSLAAMEKYIDCSQIQPYKCNKRLVIALNPLPHCGSALNNEASCNICSRKLTEPDLYRYCSISCKVKAVSRKPNDSAPPFISIQSPPPEERQAPEERQEETSEPPKRKRRRKGTPHRAPFF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01024 207 CDD Bbox2 39 78 - -
Rops9g01024 207 Pfam B-box zinc finger 38 78 IPR000315 GO:0008270
Rops9g01024 207 MobiDBLite consensus disorder prediction 157 207 - -
Rops9g01024 207 Gene3D Classic Zinc Finger 32 97 - -
Rops9g01024 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 19 206 - -
Rops9g01024 207 MobiDBLite consensus disorder prediction 176 193 - -
Rops9g01024 207 Pfam PLATZ transcription factor 80 152 IPR006734 -
Rops9g01024 207 SUPERFAMILY B-box zinc-binding domain 39 80 - -
Rops9g01024 207 ProSiteProfiles Zinc finger B-box type profile. 39 78 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01024 Rops-Chr9 16865793 16869225 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Rops9g01024 PLATZ 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01024 - - tcc:18601328 283.878