Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01023 ATGTCTTTCTCTCTCATCGAAGCCTCTAAGAAGAGGAAACGATGGCCCAAGATTTTCAGGTTGCACTCTTTCGCCGACCCTGGTTGCCCCATTGCACCTTCGGGTCCTTTCCGTGACAACGTTCGGTTCTTTCTTCAAGAAGCTGGTGAACTCGAAGATTACTCTGTGTTGGGTAATCCCATTTGGTGCACCCTTCTCGTCCATGAAAAGACCAACCTAATGGCTCCTTTCTACACCCTCGAAGAGGACGTTTACCACTCTTCACATCCCTTCTGTGACCATTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTAACAAAGAGAAGGTACCATTTCATAATACCAATGGATGACGAGTGGCATAAACCCTTAGGCGAAGGTGCTCTTGATAATGAGAGTCATCTCTTGCATGGGGTGATTCATTGCAATGGTTATGGCCATTTGCTCTGTCTTAATGGCATTGAAGGGGGTTCCAAAGTTCTTAGTGGGAGAGAGATCATGGATTTATGGGACAGGATCTGCACCAACCTTAGAGCAAGGAAAATTGCGGTGGAAGATGCTTCAAGGAAGAGGTCTATGGATCTTCGCTTACTTCATGGAGTTGCTTATGGACACTCATGGTTCGGTAGGTGGGGCTATCGATTTTGTCGTGGAAGCTTTGGGGTGACAGAAAAAATCTACTATGAAGCAATTGAAACTCTTGGCTCTTTGGAGCTTGATGAGATTGTAAAAGATTTAAGTAAGACAAAGTACTACAAAGAAATCAAGCAAATGATTCGCTGCTATCGAGATATGAGTGAAACTCAGATTATCACAATCAGGGATCTTCTCAGGTTTATGCTCACTGTCAAGTCTCGTGCTGCTCCTGTGTCTAAGATAACAGTCACTTCTTCTGCTGCTTCTTCCTCTGCATTCATCTCAAGAAATTCAACCAAACATGCACTTTCAAGCAGATCAAATCCCATGAAGGATAAATCTGCAAGGTATAAGAAGTTCAGCAGTGCAGTGGCCAATATGGATAGCAGGTGGCCCACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTGGACGCACTGAAAGAGGACAAGGTAGTGAAATCAGGTTCTGGTGGGATGACAAGGCAAGATGTGAGAGATGCTGCTAGGCTTCACATTGGAGACACAGGCTTACTTGATTATGTGCTGAAATCACTCAACAATGTGATTGTTGGAAACTTTGTTGTGCGCCGCTTGGTGAATCCATCAACTAGGATCCTGGAATATACCATTCATGAGCTTGGCAAGGGGTTCAAAGCCAATGAAATGGAGCATGGGGTACTGGCTCTTGTAGATCCCCAAGTAGAGTCATCTTGGGTGCCTGGTAATGATGTTTACAGTGATGTGTTTTGTCTGTACAAGAATGTGCTATTGGGGTACCCAGATTCAGAGCCAGTGGACTTGGCAGTTCAGACAATACTTGATAGCAGGCACTTTGTGAAGGAGTGGACAATAAGGGATGAAATGGAGCAGGTATTGACATTCATTTGCCGCTTGAAACCAAACTTTGTGGATGGTAAATCTGAGTTGAAAGGGCCACCTTGTAGTGAGATTGTCACGGTTCCACTGCATGCAACAGTTGGAGACTTGAAGCATGCTGCTGAGGCTGCTCTGAGGGACACTTATTGCATTGCAGAAAGGCTTATAGTGACAGACATCACAGAATTGATGGGTGTGAGTGATGAGGAGGTGCTTTTTGGACTAATCCAATCAGGTGTGGAACTGTGTGTGAGGGGAATTGCTATAGATTTGTGCACTCCATTGAAGTATCAGGGAGGGTCTGATAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATATGTGAGGTGTGGCAGCATACACGTTGCTGTGGCATAGATGATTCTGAGACAGTGCCACCACTGTTTGTGTGCTCTGGGTGCTGTGATTCACTTGTGCCTCCAAGGATTGAATCTGGCTTTGGTATGGATTGTGCTGATTCTATTCTGATTCAAGCTGAGCCTACCCAGTTACTGGAGTATGGGTATGGGTACTGA 2085 0.4547 MSFSLIEASKKRKRWPKIFRLHSFADPGCPIAPSGPFRDNVRFFLQEAGELEDYSVLGNPIWCTLLVHEKTNLMAPFYTLEEDVYHSSHPFCDHCRCVGWSGHFVTKRRYHFIIPMDDEWHKPLGEGALDNESHLLHGVIHCNGYGHLLCLNGIEGGSKVLSGREIMDLWDRICTNLRARKIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEKIYYEAIETLGSLELDEIVKDLSKTKYYKEIKQMIRCYRDMSETQIITIRDLLRFMLTVKSRAAPVSKITVTSSAASSSAFISRNSTKHALSSRSNPMKDKSARYKKFSSAVANMDSRWPTRRLEFAAQVIVDALKEDKVVKSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNFVVRRLVNPSTRILEYTIHELGKGFKANEMEHGVLALVDPQVESSWVPGNDVYSDVFCLYKNVLLGYPDSEPVDLAVQTILDSRHFVKEWTIRDEMEQVLTFICRLKPNFVDGKSELKGPPCSEIVTVPLHATVGDLKHAAEAALRDTYCIAERLIVTDITELMGVSDEEVLFGLIQSGVELCVRGIAIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESGFGMDCADSILIQAEPTQLLEYGYGY* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01023 694 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 665 - -
Rops9g01023 694 CDD PHD_MMD1_like 613 657 - -
Rops9g01023 694 SUPERFAMILY FYVE/PHD zinc finger 605 663 IPR011011 -
Rops9g01023 694 ProSitePatterns Zinc finger PHD-type signature. 613 657 IPR019786 -
Rops9g01023 694 SMART PHD_3 612 658 IPR001965 -
Rops9g01023 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 661 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01023 Rops-Chr9 16843351 16846165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01023 10 663 PHD Transcription Factor Family AT5G22260 34.517 1.93e-122 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01023 K26271 - gmx:100797388 1124.77