Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01022 ATGACGGAGAAGAAGAGGGAGAAGGTGGCGAATGGTGAAGTGGTAGAGGAGGAGGAGAAATGGAAGCAAACGACGTCGTGTTCGAGAACTTCATCTTCTTCATCTTCTTCGGGAGGGAGAGAGTACGAGGTGGAGGACCTGAGGGATCGGTTGAAATCGTCGAGAGGAAGCAGATTCGATTTGATAGAGAACGAGTTTGGACTCAACAACTCAACATGGAGGAAGTTCAGTCGCCAAGCCCTTCTCCATGACTTCGTTATTCATCCTGAAAACAGGTGGTATCGGGCATGGATGAAGTTCATATTGTTATGGGCAGTGTACTCTTCCTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGTCTGCCAGAGAATCTCTTCATACTGGACATTGTTGGACAAATAGCTTTTCTTGTAGACATAGTTTTGCAGTTCTTTGTTGCTTATAGAGACAGTCAGACCTACCGTATGATTCATAAACGAACCCCTATAGCTCTGCGGTATCTAAAATCGAGCTTTATCTTTGATTTTCTTGGATGTATGCCCTGGGATATCATCTACAAGGCTTGTGGACGAAAAGAGGGAGTGAGATACCTTTTGTGGATCAGATTATATCGGGCGTGGAAAGTCGAGGATTTTTTCCAGGAGATGGAAAAGGATATACGTGTCAATTACATTATTACTCGGATTGTGAAACTTATAGTAGTTGAACTCTACTGCACCCACACAGCAGCTTGCATTTTCTACTATTTGGCTACTACACTACCTGAATCCAAAGAGGGGTACACATGGATTGGAAGTTTACAACTGGGTGACTTTAGTTATTCTCATTTCAGAGAAATTGATATCTGGAAGCGCTACACGACATCTTTGTATTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATATGAGGGAGATGATATTCATAATGATATATGTTTCGTTTGACATGATCCTTGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACAGTAAAGTTTAGGGACAAGATGACAGATCTCATGAAATATATGAACAGGAATAGACTGGGAAGGGATATCCGTGAACAAATAAAAGGCCATGTGCGCTTACAGTATGAGAGCAGCTACACTGAAGCTGCTGTCATTCAGGACATTCCCATTTCTATTCGAGCTAAGATATCCCAATCATTGTATTTGCCATACATTGAAAAGGTTTATCTTTTTAGAGGCTGCTCTTCAGAATTCATCAATCAGATTGTTATTAAGCTGCATGAGGAATTCTTTCTTCCCGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCACAGCTGTAGATGGGTCTGAAGAAACTGTTTCACTTCTACAGCCTAATAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATACACTGTTCGCGTTTGTGAACTGTGTAGGGTCCTACGGCTTGATAAACAATCATTTACAAATATCCTAGATATATACTTTTATGATGGAAAGAAAGTACTAGACAACCTTCTGGAGGGAAAAGAGTCTCTTCGAGGTAAGCAATTGGAGTCAGACATCACCTTTCATATGGAAAAGATAGAAGCTGAACTTGCTTTGAAGGTCAATAGAGCAGCTTTTAATGGGGATCTGTATCAGCTAAAATGTTTGGTTCGAGCTGGAGCTGATCCCAGCAAGACAGATTATGATGGAAGGTCACCTCTGCATCTTGCGGCATCTAGAGGATATGAAGATGTCACACTTTTCCTTATTCAAGAAGGTGTAAACGTCAACATCAAAGATAACTTCGGGTACACACCCTTACTTGAAGCAGTTAAGAATGGACATGATCGGGTTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTATGAACATAGAAAATGCTGGTAGTTTCTTATGTATAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATCCAAATTTGAAAGATTATGATTACCGGACCCCACTTCATATTGCTGCAGCTGAAGGTTTACACTTCATGACAAAGTTGCTATTAGAAGCCGGAGCTAGTGTTTTTACAAAAGACAGATGGGGAAATACCCCACTTGATGAAGCCCGGAAGTGTGGAAACAAGAATCTGATCAAGCTACTGGAAGATGCAAAATCTGCTCAATTGTCAGAATTCCCATATGCCTCCCAAGAATATACAGATCATATGCACAGAAAGAAGTGCACAGTGTTCCCTTTCCACCCGTGGGATCCAAATGAACATAGAAGAAATGGAATTGTATTATGGGTGCCACGCACCATTGAAGAGTTGATCAAAACAGCAGCACAGCAGATAGGATTTTCTAGCGATTCTTTTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATGATCAGAAGCTGTATTTAGTCCATGAAACACGCTAG 2523 0.4071 MTEKKREKVANGEVVEEEEKWKQTTSCSRTSSSSSSSGGREYEVEDLRDRLKSSRGSRFDLIENEFGLNNSTWRKFSRQALLHDFVIHPENRWYRAWMKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLVDIVLQFFVAYRDSQTYRMIHKRTPIALRYLKSSFIFDFLGCMPWDIIYKACGRKEGVRYLLWIRLYRAWKVEDFFQEMEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESKEGYTWIGSLQLGDFSYSHFREIDIWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTVKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQSLYLPYIEKVYLFRGCSSEFINQIVIKLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGTAVDGSEETVSLLQPNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFTNILDIYFYDGKKVLDNLLEGKESLRGKQLESDITFHMEKIEAELALKVNRAAFNGDLYQLKCLVRAGADPSKTDYDGRSPLHLAASRGYEDVTLFLIQEGVNVNIKDNFGYTPLLEAVKNGHDRVASLLVREGASMNIENAGSFLCIAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHIAAAEGLHFMTKLLLEAGASVFTKDRWGNTPLDEARKCGNKNLIKLLEDAKSAQLSEFPYASQEYTDHMHRKKCTVFPFHPWDPNEHRRNGIVLWVPRTIEELIKTAAQQIGFSSDSFILSEDAGKITDVDMIKDDQKLYLVHETR* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01022 840 ProSiteProfiles KHA domain profile. 767 840 IPR021789 -
Rops9g01022 840 Pfam Cyclic nucleotide-binding domain 435 519 IPR000595 -
Rops9g01022 840 PANTHER POTASSIUM CHANNEL AKT1 65 837 IPR045319 GO:0005249|GO:0006813
Rops9g01022 840 SMART cnmp_10 415 533 IPR000595 -
Rops9g01022 840 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Rops9g01022 840 FunFam Gated outwardly-rectifying K+ channel 630 756 - -
Rops9g01022 840 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515
Rops9g01022 840 MobiDBLite consensus disorder prediction 1 24 - -
Rops9g01022 840 ProSiteProfiles Ankyrin repeat region circular profile. 688 720 - -
Rops9g01022 840 Gene3D Jelly Rolls 399 536 IPR014710 -
Rops9g01022 840 MobiDBLite consensus disorder prediction 1 43 - -
Rops9g01022 840 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Rops9g01022 840 Pfam Ion transport protein 95 340 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops9g01022 840 Pfam KHA, dimerisation domain of potassium ion channel 766 835 IPR021789 -
Rops9g01022 840 ProSiteProfiles cAMP/cGMP binding motif profile. 415 518 IPR000595 -
Rops9g01022 840 CDD CAP_ED 415 521 IPR000595 -
Rops9g01022 840 Gene3D - 96 341 - -
Rops9g01022 840 SMART ANK_2a 624 653 IPR002110 GO:0005515
Rops9g01022 840 SMART ANK_2a 721 751 IPR002110 GO:0005515
Rops9g01022 840 SMART ANK_2a 655 684 IPR002110 GO:0005515
Rops9g01022 840 SMART ANK_2a 591 620 IPR002110 GO:0005515
Rops9g01022 840 SMART ANK_2a 688 717 IPR002110 GO:0005515
Rops9g01022 840 SUPERFAMILY cAMP-binding domain-like 343 532 IPR018490 -
Rops9g01022 840 FunFam Potassium channel KAT2 403 540 - -
Rops9g01022 840 Gene3D - 553 629 IPR036770 -
Rops9g01022 840 MobiDBLite consensus disorder prediction 25 40 - -
Rops9g01022 840 Gene3D - 630 760 IPR036770 -
Rops9g01022 840 PRINTS Ankyrin repeat signature 592 607 IPR002110 GO:0005515
Rops9g01022 840 PRINTS Ankyrin repeat signature 640 654 IPR002110 GO:0005515
Rops9g01022 840 Pfam Ankyrin repeats (3 copies) 565 654 IPR002110 GO:0005515
Rops9g01022 840 Pfam Ankyrin repeats (3 copies) 660 742 IPR002110 GO:0005515
Rops9g01022 840 Gene3D Helix hairpin bin 342 398 - -
Rops9g01022 840 ProSiteProfiles Ankyrin repeat region circular profile. 591 623 - -
Rops9g01022 840 ProSiteProfiles Ankyrin repeat region circular profile. 624 655 - -
Rops9g01022 840 PRINTS EAG/ELK/ERG potassium channel family signature 287 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01022 840 PRINTS EAG/ELK/ERG potassium channel family signature 130 140 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01022 840 PRINTS EAG/ELK/ERG potassium channel family signature 331 340 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01022 840 PRINTS EAG/ELK/ERG potassium channel family signature 239 249 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops9g01022 840 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Rops9g01022 840 SUPERFAMILY Voltage-gated potassium channels 89 340 - -
Rops9g01022 840 FunFam Potassium channel SKOR 95 340 - -
Rops9g01022 840 SUPERFAMILY Ankyrin repeat 564 743 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01022 Rops-Chr9 16821180 16832050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01022 663 741 Ion Channels AT5G37500 36.634 5.84e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01022 K21867 - gmx:100814385 1467.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01022 9 16821180 16832050 Rops9g01022 9 16821180 16832050 ECH