Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01021 ATGGATGCACAAGCCAAGAAAAAGGCATTGTTTCGTGCTAAATTGAATGCCCAGAAGAAGGAAAAGCGCATAGAATCTCCCCTTGTTAGATATAATGAATTTGATCAGCCTGTTTGCCGGGTTTGTGATGTTGTTCTGAAGTCTGAATCTATATGGGATGCACACCAAGTTTCTCGAAAGCATCGTGAGGCAATAAATAATCTTAAAGCTAATGCAGCTGGATTAACTCAGCACAACAATGCAAAGCCTGACTTTCCCAAGGCTAGACTAGAACAGCCTTCAGACTCACAATTCAAAATGCCCCAATCTTCCCAAGAAGTGCCTAAACCTCAGTCATCATCAGTGCTTCCACCAGATTTTTTTGATAACTGTGATGCAAGAAAGGCAAGATCCGAAAAGGATTCTTTCCATTCGGTGGACTCTGATGTTGGTAGAAAAGTGGGGGTTTCTGCTCAAAATCAGGTGTTAAACTTGGAGAAGGAGAAAGGTCACATTCATGGCAATAATACTGCACAGGAAAAGGTTAGTCAAGCAACATCGGAGATTAGGCAAACATCAGCCAAGACTACAGATACAGAGATCAAGCAAGTAAAAGGGGTTCTGCCTGAAGGCTTTTTTGATAATAAGGAAGCTGATTTGCTGGCACGTGGCATTAAGCCTGTTAAGCCAGATGTTAAAGACGAGTACAGGGAATTTGAGAAGTTGATTCAAGAGGATTTGCAGGAGGTGGATAACCGGTTGGAAGAAGAAGAGATCGATGCTGCTGAAACGATAGAAGAAGCTGAATCTGTAGAGCAAAAGGTCTGCAGGGAGAAAGTGGAAATGTTGAAGAAGAGGAGATTGGAGCTAAAGGCTGCTAACTCTGCAAAGCGTAGTAAATCTTCTGAAGTTGTTACCAAGGAGTCTAGACATGAAGAGTCATCCAGTGATGATGAAAGTGCGGCACAACCCTTCAGGATGCCTCGTCAAAGAGATGAGTCCCCTGCAGTTTGTGTCTACACTGTTTGCGATGAATCAAGATATTTGATTGCGAGGAATGTTCCAGCATTAGGTTGTGGAGATGATTTGCGACGAGTATTTTCATCCTATGGAGAAGTTGAGGAGTGTAAGCCAATGGATGCAGAGGACTGTGAGCCATTCACCGATGTCTATTGGATTAAATTCCGCCTTTTCAGCAATGCCAGGTTTGCGAAGAGAAAATTGGATGATTATGTTTTCCTCGGGAACCCATTGCAGGTTTCCTATGCTCCCCATTTTGAGAGCCTCTTAGACACAAAGGATAAATTAGAGGGAAGAAGAAGAGAGGTTTTAGCTCGATTGAACCCTAGAAAATCCAAAGAGACTACAGCCTCATGCTCTAAGCCTTTGATTACCTCGAAGGCTGGTTGCCTATCAGAACATTTAGATCCTAATGAAAGGAATGTAGAATTTGAAGGAAGGTCACACAATGGTAATCTTCCAATAAGAACAGTTTCCTCTAATGAGAATTATTTTGCCTCACATTCCATGAATCAAACAGTGAAATCTGTCCGGGATAAGCTTGATAAGATTCAATCTAGTGGCGAACATCTACCACCAGAATCTGCATCAAAGAAAGCGCGAGTTGACAATAGAAGAAGGATTTAA 1626 0.4219 MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESIWDAHQVSRKHREAINNLKANAAGLTQHNNAKPDFPKARLEQPSDSQFKMPQSSQEVPKPQSSSVLPPDFFDNCDARKARSEKDSFHSVDSDVGRKVGVSAQNQVLNLEKEKGHIHGNNTAQEKVSQATSEIRQTSAKTTDTEIKQVKGVLPEGFFDNKEADLLARGIKPVKPDVKDEYREFEKLIQEDLQEVDNRLEEEEIDAAETIEEAESVEQKVCREKVEMLKKRRLELKAANSAKRSKSSEVVTKESRHEESSSDDESAAQPFRMPRQRDESPAVCVYTVCDESRYLIARNVPALGCGDDLRRVFSSYGEVEECKPMDAEDCEPFTDVYWIKFRLFSNARFAKRKLDDYVFLGNPLQVSYAPHFESLLDTKDKLEGRRREVLARLNPRKSKETTASCSKPLITSKAGCLSEHLDPNERNVEFEGRSHNGNLPIRTVSSNENYFASHSMNQTVKSVRDKLDKIQSSGEHLPPESASKKARVDNRRRI* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01021 541 MobiDBLite consensus disorder prediction 72 117 - -
Rops9g01021 541 MobiDBLite consensus disorder prediction 292 312 - -
Rops9g01021 541 Coils Coil 233 267 - -
Rops9g01021 541 MobiDBLite consensus disorder prediction 292 322 - -
Rops9g01021 541 SUPERFAMILY RNA-binding domain, RBD 322 418 IPR035979 GO:0003676
Rops9g01021 541 MobiDBLite consensus disorder prediction 169 187 - -
Rops9g01021 541 SUPERFAMILY beta-beta-alpha zinc fingers 31 71 IPR036236 -
Rops9g01021 541 CDD RRM_RBM48 330 429 IPR034264 -
Rops9g01021 541 MobiDBLite consensus disorder prediction 527 541 - -
Rops9g01021 541 MobiDBLite consensus disorder prediction 518 541 - -
Rops9g01021 541 Pfam Zinc-finger of C2H2 type 39 61 - -
Rops9g01021 541 MobiDBLite consensus disorder prediction 95 117 - -
Rops9g01021 541 Gene3D - 237 420 IPR012677 -
Rops9g01021 541 MobiDBLite consensus disorder prediction 159 187 - -
Rops9g01021 541 FunFam RNA-binding protein 48 isoform X4 335 436 - -
Rops9g01021 541 Gene3D Classic Zinc Finger 32 70 - -
Rops9g01021 541 Coils Coil 168 188 - -
Rops9g01021 541 PANTHER UNCHARACTERIZED 1 313 IPR040050 GO:0003676|GO:0005681|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01021 1 296 C2H2 Transcription Factor Family AT3G02860 51.645 2.58e-88 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01021 K13104 - gmx:100808515 457.218