Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01009 ATGAAGTCACTGCTTCGTTTAACGGTTCTGTTATGTTTAACGGCCGCCATTGTTACCGGCGCGGATCTAGCTTCCGATAGGGCGAGCCTGGTGGCGCTGCGTAACGCCGTTGGAGGTCGCACACTTCTCTGGAACGTGACGGCGAATAGCCCGTGCTCATGGACCGGTGTGGTCTGCAATAACGGAAGGGTAACGATGTTACGGTTACCGGCTATGGGTCTCTCCGGTAAACTTCCGATGGGTTTAGGGAACCTGACCGAACTGCAGACACTTTCTCTCCGGTTCAATGCTCTAACCGGACCTATTCCATCCGATTTCAGCAACCTCCATGCCTTAAGGAACCTTTACCTTCATGGCAATTTCTTCTCCGGTGAAATCCCTGATTTTGTGTTCAATTTGCAGAATCTCGTGCGTTTGAATTTGGGTAGGAACAATTTCAGTGGAGAGATCTCACCAAAATTCAACACTCTCACTCGTTTGGACACACTCTATTTAGAACGCAACGGGTTCACCGGTTCAATCCCTGACCTCAGTGTCCCTCCTCTGCATCAGTTCAATGTTTCGGATAACCGGTTTACCGGGTCAATTCCAGAGAGGTTTTCACGTTTGGATGAAAGCGCGTTTGTTGGGAATTCCCTCTGTGGAAAGCCCCTTCAACCTTGCCCTGACTCTGGGAAAGACAATAACTTATCTGGTGGAGCCATTGCGGGTATTGTGATCGGTTCTTTGTTTGGTTTGTTACTGATTCTGCTACTTTTGTTCTTCTTGTGTAAGAGAAGAAGGAAAAGTGATTCCACTGATGTGGCACCTGCCAAACGTGGTGTTGAGGATGAAGTGCCTCGTGAAAGGAATGGTGAGAGTGGTGGTGGAAGTAATTCAGCTTCAGCTTCAGCATCTGTGGCAGAGAAGAGTGATGTTAAGAGTGGTGGTGGGGATAAGAGTTTGGTGTTTATTGGGAATGTGAATAGACCTTTTACTTTAGATGATTTGTTAAGGGCTTCTGCTGAAGTTCTTGGTAAAGGGACATTTGGAACTACTTACAAGGCCACTTTGGAGATGTATACTAGTGTGGCGGTGAAGAGGTTGAAGGATGTTACAGCAACTGAAAGGGAATTCAGAGAGAAATTTGAGGAAGTGGGGAAACTGGTTCATGAGAATTTGGTCCCACTTAGGGGTTATTATTTTAGCAGAGATGAAAAGCTTATTGTGTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTACATGCCAACAATGGAGCTGGCAGGACTCCGCTGAATTGGGAAACAAGGTCTGCCATTGCCCTTGGTGCTGCCCATGGAATTGCATACCTACATTCACAAGGCCCAACAGCATCCCATGGAAATATCAAGTCATCAAATATCCTTCTCACCAAATCTTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCTTATCTTGCTCTTCCAACCTCTACACCAAACCGTGTTTCTGGTTACCGTGCTCCAGAGGTCACTGATGCCCGCAAAGTATCCCAGAAAGCAGATGTCTATAGCTTTGGTATCATGCTTTTGGAGCTGCTTACCGGGAAGGCTCCTACTCATTCTTCGCTGAATGAAGAAGGGGTAGATCTCCCAAGATGGGTCCAATCTGTGGTTCTAGAGGAATGGAACACTGAAGTTTTTGACATGGAGCTTCTCAGGTACCAAAATGTTGAGGAGGAAATGGTCAAGCTCTTGCAGCTTGCTCTTGAATGTACTGCTCAATATCCTGACAAGAGACCTTCAATGGATGTGGTGGCAAGCAGGATTGAGGAAATTTGTCAACCTAGTTTAGAGAAAGGGGAAGAGAAGAATCAACAGAACTACTCTGTTGACTAG 1863 0.4638 MKSLLRLTVLLCLTAAIVTGADLASDRASLVALRNAVGGRTLLWNVTANSPCSWTGVVCNNGRVTMLRLPAMGLSGKLPMGLGNLTELQTLSLRFNALTGPIPSDFSNLHALRNLYLHGNFFSGEIPDFVFNLQNLVRLNLGRNNFSGEISPKFNTLTRLDTLYLERNGFTGSIPDLSVPPLHQFNVSDNRFTGSIPERFSRLDESAFVGNSLCGKPLQPCPDSGKDNNLSGGAIAGIVIGSLFGLLLILLLLFFLCKRRRKSDSTDVAPAKRGVEDEVPRERNGESGGGSNSASASASVAEKSDVKSGGGDKSLVFIGNVNRPFTLDDLLRASAEVLGKGTFGTTYKATLEMYTSVAVKRLKDVTATEREFREKFEEVGKLVHENLVPLRGYYFSRDEKLIVYDYMPMGSLSALLHANNGAGRTPLNWETRSAIALGAAHGIAYLHSQGPTASHGNIKSSNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSVVLEEWNTEVFDMELLRYQNVEEEMVKLLQLALECTAQYPDKRPSMDVVASRIEEICQPSLEKGEEKNQQNYSVD* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01009 620 Gene3D Ribonuclease Inhibitor 179 225 IPR032675 -
Rops9g01009 620 SUPERFAMILY L domain-like 44 203 - -
Rops9g01009 620 FunFam Probable inactive receptor kinase At1g48480 407 609 - -
Rops9g01009 620 ProSiteProfiles Protein kinase domain profile. 332 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g01009 620 FunFam pollen receptor-like kinase 1 301 406 - -
Rops9g01009 620 SUPERFAMILY Protein kinase-like (PK-like) 336 597 IPR011009 -
Rops9g01009 620 Gene3D Transferase(Phosphotransferase) domain 1 407 619 - -
Rops9g01009 620 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Rops9g01009 620 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Rops9g01009 620 MobiDBLite consensus disorder prediction 286 302 - -
Rops9g01009 620 Pfam Protein tyrosine and serine/threonine kinase 336 596 IPR001245 GO:0004672|GO:0006468
Rops9g01009 620 Gene3D Phosphorylase Kinase; domain 1 303 406 - -
Rops9g01009 620 MobiDBLite consensus disorder prediction 266 310 - -
Rops9g01009 620 PANTHER OS05G0588300 PROTEIN 7 607 - -
Rops9g01009 620 CDD STKc_IRAK 338 601 - -
Rops9g01009 620 MobiDBLite consensus disorder prediction 266 284 - -
Rops9g01009 620 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Rops9g01009 620 FunFam Probable inactive receptor kinase RLK902 23 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01009 Rops-Chr9 16644080 16647322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01009 22 601 Receptor kinase-like Gene Family AT1G48480 57.259 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops9g01009 PK_Tyr_Ser-Thr 4.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01009 - - gmx:100801103 892.108