Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01007 ATGGGAAGGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCAGAGGAGGATAAGAAGCTTATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAACTATCAGGGTTGTTAAGGTGTGGGAAGAGTTGCAGGCTCAGGTGGACAAACTACCTGAGGCCAGACTTAAAGAGAGGCCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAACAGATGGTCTAAGATCGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAAAACCATTGGAATACCCACATAAAGAAAAAACTCAAGAAAATGGGTATTGATCCTGTCACCCACCAGCCACTCTCTAATGCAACTGGGCAAACCCAAAATCAACCTAAACAACAACAACAACAACTACACCAACCATTAGAAGAACCCCAGAAGCAACAACCTTTGCCAGTTGACTATGACCCCAAAATAGAATCTGAAATTGACCAAAATAAAGAGCCAGAGAAGCCAGAGACTTCATTTGAGTTATCAACCATCACTGAAACCAAAGAGGAAGACAAAATTATGACACCCATATTTGACACAATGGAACTAATGGAAGGGTTCTGCACAGATGAAGTTCCAATAATAGAACCTGATGAAATTCTAGTGCCATGTGTTCCTTCCTCTTCATCAACCTCTTCTTCAAATTCTACCAACTTTCTTGAAGACCTGCAGCTCCCAGATTTTGAGTGGTCTTGTAATTACATTGATAATGGCAATAGCAATGAAGACAACAATAATAGCAGTATGGCCTTTTGGGATGATGACTTTATGAGCAGCTTGAATTTGCTGATTAATGATGACGATGGTGGTGATAGAAAACAAGCATTCGATGATGCTCTTCTCGGTCAGTACTCAAGAATGATCATGGATTCAGAATCTTGGGCATATGGGTTGTTTTGA 978 0.411 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLSGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHQPLSNATGQTQNQPKQQQQQLHQPLEEPQKQQPLPVDYDPKIESEIDQNKEPEKPETSFELSTITETKEEDKIMTPIFDTMELMEGFCTDEVPIIEPDEILVPCVPSSSSTSSSNSTNFLEDLQLPDFEWSCNYIDNGNSNEDNNNSSMAFWDDDFMSSLNLLINDDDGGDRKQAFDDALLGQYSRMIMDSESWAYGLF* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01007 325 FunFam MYB transcription factor 70 149 - -
Rops9g01007 325 Gene3D - 70 158 - -
Rops9g01007 325 CDD SANT 16 61 IPR001005 -
Rops9g01007 325 MobiDBLite consensus disorder prediction 126 153 - -
Rops9g01007 325 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
Rops9g01007 325 MobiDBLite consensus disorder prediction 124 196 - -
Rops9g01007 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops9g01007 325 MobiDBLite consensus disorder prediction 166 196 - -
Rops9g01007 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops9g01007 325 SMART sant 66 114 IPR001005 -
Rops9g01007 325 SMART sant 13 63 IPR001005 -
Rops9g01007 325 FunFam MYB transcription factor 11 67 - -
Rops9g01007 325 CDD SANT 74 112 IPR001005 -
Rops9g01007 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops9g01007 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops9g01007 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops9g01007 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops9g01007 325 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Rops9g01007 325 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01007 Rops-Chr9 16609780 16612208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01007 1 293 MYB Transcription Factor Family AT1G66230 55.263 9.00e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g01007 Myb_DNA-binding 2.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01007 K09422 - gmx:100792103 483.411