Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00993 ATGGCAACTGAAGAGGTTAATAAACCTCAATCACTTCCTCCATACCCTGAGATGATATTAAAAGCACTTGAAGCTCTGAATGAAGCCAATGGATCCAACAAGTCAGCAATATGGAACTACATAGAATCTACATATGGTGAGTTGCCAGAAGATCACTCATCTCTTCTCTCTCTTCACCTTAACAAGATGAAAGAGAGTGGTGAACTTGTGTTCTTGAAGAACAACTACATGAAGCCTGACCCAAATGCCCCACCAAAGAGAGGCCGTGGAAGGCCACCAAAACCAAAGGTTCCTTTGCCACCAGGCACTGTTTTGTCCCCACCAAGGCCAAGGGGTCGTCCACCAAAAGCCCCAGATGCCTCTCCAAAGCCTAAGGTGTCAAGTGGAAGACCAAGAGGAAGGCCAAAGAAGATTGCTAGGTCGCCGGCGGTGGCTTCTCCGACCGCCGCCGCCTCTGGTGGAAGACCAAGAGGACAATTTTCTTAG 486 0.4856 MATEEVNKPQSLPPYPEMILKALEALNEANGSNKSAIWNYIESTYGELPEDHSSLLSLHLNKMKESGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKAPDASPKPKVSSGRPRGRPKKIARSPAVASPTAAASGGRPRGQFS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00993 161 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Rops9g00993 161 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Rops9g00993 161 PRINTS AT-hook-like domain signature 127 137 IPR017956 GO:0003677
Rops9g00993 161 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops9g00993 161 PANTHER HISTONE H1 7 138 - -
Rops9g00993 161 MobiDBLite consensus disorder prediction 94 121 - -
Rops9g00993 161 Pfam linker histone H1 and H5 family 13 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops9g00993 161 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Rops9g00993 161 Pfam AT hook motif 86 94 IPR017956 GO:0003677
Rops9g00993 161 Pfam AT hook motif 129 139 IPR017956 GO:0003677
Rops9g00993 161 Pfam AT hook motif 108 119 IPR017956 GO:0003677
Rops9g00993 161 MobiDBLite consensus disorder prediction 75 161 - -
Rops9g00993 161 SMART AT_hook_2 129 141 IPR017956 GO:0003677
Rops9g00993 161 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Rops9g00993 161 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Rops9g00993 161 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops9g00993 161 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Rops9g00993 161 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Rops9g00993 161 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Rops9g00993 161 Gene3D - 7 90 IPR036388 -
Rops9g00993 161 FunFam HMG-Y-related protein A 8 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00993 Rops-Chr9 16309910 16311270 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00993 13 81 Single Myb Histone (SMH) Gene Family AT1G72740 36.232 3.29e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00993 - - gmx:100802642 199.519