Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00989 ATGGCAACTGAAGAGGTTAATAAACCTCAATCACTTCCTCCATACCCTGAGATGATATTAAAAGCACTTGAAGCTCTGAATGAAGCCAATGGATCCAACAAGTCAGCAATATGGAACTACATAGAATCTACATATGGTGAGTTGCCAGAAGATCACTCATCTCTTCTCTCTCTTCACCTTAACAAGATGAAAGAGAGTGGTGAACTTGTGTTCTTGAAGAACAACTACATGAAGCCTGACCCAAATGCCCCACCAAAGAGAGGCCGTGGAAGGCCACCAAAACCAAAGGTTCCTTTGCCACCAGGCACTGTTTTGTCCCCACCAAGGCCAAGGGGTCGTCCACCAAAAGCCCCAGATGCCTCTCCAAAGCCTAAGGTGTCAAGTGGAAGTGGAAGACCAAGAGGAAGGCCAAAGAAGATTGCTAGGTCTCCGGCGGTGGCTTCTCCGACTGCCGCCGCCTCTGGTGGAAGACCAAGAGCACAATCTTCTTAG 492 0.4837 MATEEVNKPQSLPPYPEMILKALEALNEANGSNKSAIWNYIESTYGELPEDHSSLLSLHLNKMKESGELVFLKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKAPDASPKPKVSSGSGRPRGRPKKIARSPAVASPTAAASGGRPRAQSS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00989 163 PANTHER HISTONE H1 7 140 - -
Rops9g00989 163 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Rops9g00989 163 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Rops9g00989 163 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Rops9g00989 163 FunFam HMG-Y-related protein A 8 90 - -
Rops9g00989 163 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops9g00989 163 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Rops9g00989 163 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Rops9g00989 163 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Rops9g00989 163 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops9g00989 163 MobiDBLite consensus disorder prediction 94 121 - -
Rops9g00989 163 Pfam linker histone H1 and H5 family 13 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops9g00989 163 MobiDBLite consensus disorder prediction 74 163 - -
Rops9g00989 163 Gene3D - 7 90 IPR036388 -
Rops9g00989 163 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Rops9g00989 163 PRINTS AT-hook-like domain signature 129 139 IPR017956 GO:0003677
Rops9g00989 163 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Rops9g00989 163 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00989 Rops-Chr9 16288985 16290328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00989 13 81 Single Myb Histone (SMH) Gene Family AT1G72740 36.232 2.67e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00989 - - gmx:100793697 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00989 9 16288985 16290328 Rops9g00989 9 16288985 16290328 ECH