Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00982 ATGGAGAAGACTTCAGGGGTGAGAAAAGGTGCATGGACACATGAGGAAGATAAACTACTCAAGGCTTGCATTCACAAGTATGGGGAAGGAAAATGGCATTTAGTTCCTAAAAAAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGACTGAGGTGGTTGAATTATTTAAACCCAAACATCAATAGAGGAAGCTTTGCTGATGATGAAGTTGATATGATTCTAAGGTTACATAAACTCCTAGGGAACAGATGGTCATTGATTGCTAGAAGGCTTCCGGGCAGAACAGCTAACGATGTGAAGAACTACTGGCACACACACTTGCGCAAGAAGGTTGCCTCAAACAAGAAAGAAGAAGAGAAGCCTAAGGAAACCATGGAAGCTAACAAGATTATAAGACCTCAACCTCGAACTTTCTCAAATCATTCACCATGGTCAAGTGGGAAACTGATTCTTGCAAATGATGGTGGTGATAGAGAGAGTGCAACCCCACTAGTGGCTTCAAATGATAATAATGTTCCGAAAGAGAAGGCTGAGGAAACCATGAAAACTCACGAGATTATAAGACCTCAACCTCGAAAATTTTCAAATCATTCACCATGGTTGAAGGGGAAACAGATTCTTGCAAATGATGGTGGCATTAGAGAGAAAGCTACGTCACTAGTGGCTTCAAAAGATGATAATGTTCCTAGAGAGTGTGAGACACCGACTATGCTCCCACTTGGTAATGGTGTTGGTGATAAAGATAGTGTTCCACAACCATATCTTGATAATGATCCACAGTCTACAATGTGGTGGGAGAGTTTGTTTAACTTGGATGACCAAATAAGCTATGAGAAAATTGTGGGCACATGTTCTTTATTGAGTGAGCAAGAGGAGAATTCCATCTTGGAGTTTCCAAATGTGGAGGACTTCTTTGCTGAAGGCCCCAGTGATAGTGACTGCTATTGGAATTCAAACCTTTGTGATTTTGATTCTCTTTGGGATCTCTAA 990 0.4101 MEKTSGVRKGAWTHEEDKLLKACIHKYGEGKWHLVPKKAGLNRCRKSCRLRWLNYLNPNINRGSFADDEVDMILRLHKLLGNRWSLIARRLPGRTANDVKNYWHTHLRKKVASNKKEEEKPKETMEANKIIRPQPRTFSNHSPWSSGKLILANDGGDRESATPLVASNDNNVPKEKAEETMKTHEIIRPQPRKFSNHSPWLKGKQILANDGGIREKATSLVASKDDNVPRECETPTMLPLGNGVGDKDSVPQPYLDNDPQSTMWWESLFNLDDQISYEKIVGTCSLLSEQEENSILEFPNVEDFFAEGPSDSDCYWNSNLCDFDSLWDL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00982 329 Gene3D - 63 133 - -
Rops9g00982 329 FunFam Myb transcription factor 9 61 - -
Rops9g00982 329 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Rops9g00982 329 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Rops9g00982 329 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Rops9g00982 329 MobiDBLite consensus disorder prediction 225 246 - -
Rops9g00982 329 CDD SANT 67 107 IPR001005 -
Rops9g00982 329 CDD SANT 11 56 IPR001005 -
Rops9g00982 329 SMART sant 61 109 IPR001005 -
Rops9g00982 329 SMART sant 8 58 IPR001005 -
Rops9g00982 329 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 166 - -
Rops9g00982 329 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Rops9g00982 329 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Rops9g00982 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Rops9g00982 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Rops9g00982 329 Gene3D - 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00982 Rops-Chr9 16186341 16187765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00982 2 140 MYB Transcription Factor Family AT1G66370 61.905 3.05e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g00982 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00982 - K16166 tpra:123921946 279.641