Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00981 ATGGAGAAGACTTCAGGGGTGAGAAAAGGTGCATGGACACATGAGGAAGATAAACTACTCAAGGCTTGCATTCACAAGTATGGGGAAGGAAAATGGCATTTAGTTCCTAAAAAAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGACTGAGGTGGTTGAATTATTTAAACCCAAACATCAATAGAGGAAGCTTTGCTGATGATGAAGTCGATATGATTCTAAGATTACATAGACTCCTGGGGAATAGATGGACATTGATTGCTGGAAGGATTCCGGGCAGAACAGCTAACGATGTGAAGAACTACTGGCACACGCACTTGCTCAAGAAGATGGCCTCAAACAAGAAAGACAAGAAAGAAGAAGAGAAACCTAAGGAAACCATGGAAGCTCACAAAATTAAAAGACCTCAGCCTCGAGCTTTCTCAAATCATTCACCATGGTCAAGTGGTAAACAGATTCTTGCAACTGGTGGTGGTGATAGAGAGAGTGCAACCCCACTAGTGGCTTCAAATGATGATAATGTTCCGAAAGAGTGTGACAAGGAAGACAATAGAGAAAAAGAGAAGGCTGAGGAAACCATGAAAGCTCACGAGATTATAACACCTCGACCTCGAAGATTTTCAAATCATTCACCTTGTTTGAAGGGGAAACATATTCTTGCAAATGATGGCGGCATTAAAGAGAGTGCTACGTCACTAGTGGCTTCAAATGATGATAATGTTCCAAGAGAGTGTGAGACACCGACTATGCTCCCACTTGGTAATGGTGTTGGTGATAGAGATAGTGTTCCACAACCATATCTTGATAATGACCCACAGTCTACAATGTGGTTGGAGAGTTTGTTGAACTTGGATGGCCAAATTAGCAATGAGAAAATTGTGGGCACATGTTCTTTATTGAGTGAGCAAGTGGAGAATTCCTTCTTGGAGTTTCCAAATGTGGAGGACTTCTTTGCTGAAGGTCCCAGTGGTAGTGACTGCTTTTGGAATTCCAACTTTTGTGACTTTGAGTCTCTTTGGGATCTCTAA 1029 0.4189 MEKTSGVRKGAWTHEEDKLLKACIHKYGEGKWHLVPKKAGLNRCRKSCRLRWLNYLNPNINRGSFADDEVDMILRLHRLLGNRWTLIAGRIPGRTANDVKNYWHTHLLKKMASNKKDKKEEEKPKETMEAHKIKRPQPRAFSNHSPWSSGKQILATGGGDRESATPLVASNDDNVPKECDKEDNREKEKAEETMKAHEIITPRPRRFSNHSPCLKGKHILANDGGIKESATSLVASNDDNVPRECETPTMLPLGNGVGDRDSVPQPYLDNDPQSTMWLESLLNLDGQISNEKIVGTCSLLSEQVENSFLEFPNVEDFFAEGPSGSDCFWNSNFCDFESLWDL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00981 342 MobiDBLite consensus disorder prediction 113 136 - -
Rops9g00981 342 MobiDBLite consensus disorder prediction 174 195 - -
Rops9g00981 342 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Rops9g00981 342 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Rops9g00981 342 CDD SANT 67 107 IPR001005 -
Rops9g00981 342 SMART sant 61 109 IPR001005 -
Rops9g00981 342 SMART sant 8 58 IPR001005 -
Rops9g00981 342 MobiDBLite consensus disorder prediction 237 258 - -
Rops9g00981 342 CDD SANT 11 56 IPR001005 -
Rops9g00981 342 MobiDBLite consensus disorder prediction 112 195 - -
Rops9g00981 342 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Rops9g00981 342 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Rops9g00981 342 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Rops9g00981 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Rops9g00981 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Rops9g00981 342 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 186 - -
Rops9g00981 342 Gene3D - 64 137 - -
Rops9g00981 342 FunFam Myb transcription factor 9 61 - -
Rops9g00981 342 Gene3D - 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00981 Rops-Chr9 16134435 16137432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00981 2 143 MYB Transcription Factor Family AT1G66370 59.864 1.84e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g00981 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00981 - K16166 mtr:11424892 258.07