Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00972 ATGATGGGTTTCTCCCAAGAAACCGAAACCTGCACTGATACTCCTCCAAGTGTTTCATGTGCAGTTGCAGATAACTTCTCTGACTACAAAAGGTTCAAATTCAATAACTTTTTGAGAAAAATGTTCCGGGAGTTTGTTTTTGCATGTGTTGCTGTTCCATCTGGTGACAAAAACGATAAAAAGGCAACTTTGGAGCACAACAAGGTGTGGTTGCTGGCTGAGTCTGGTGGGTGTGGAGCAGAATTGGCAGCAAGTGCTGATCCACGATCGGTTCACTCATCTTTCAGGTTCAGCTTCCGTTCTCAGGTTGAGATTGAATCCTTGGACATGAGTTCTTCTGCTGCAGCAGCAACCGTTTTGATGGTGGATTTGGAATATGAAGCCAGGGAGATGAAATGGAGGAGGATGGTGTCATTGGAGAAAAGCATATCCCCAGTGGTCAACACTTTGATCAGGTTTAGCTATGATGAAATTCTATCTGCTACTCACAATTTCTCACAAGGTAGAATATTGGGGAGAGGGGGCTTGAGTTGTGTTTTTAGAGGAAGAGTTGGACTTTTGAGAATTGCTGTCGCAATTAAACGGTTGAAGAAGGATAACAAGGAGTGTGCCAAGGCGTTTTGTAGAGAATTGATGATTGCAAGTTCACTTCATTGCACAAACGTTGTTCCTCTTGTGGGATTTTGTATTGATTCAGAGGAGGGTTTGTTTTTGGTGTACAAGTATGTATCAGGGGGCAGCTTAGAGCATCACTTGCATGGGAGGAAGAAGAAGAATGTGAAGGGTGGTTCACCACTTCCATGGTCTGTGAGGTATAAAGTTGCAATTGGGATTGCAGAAGCTGTGACTTACCTGCATTATGGAACAGAAAGATGTGTTGTTCACAGAGATATTAAGCCTTCAAACATTCTACTTTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTTCATGGACTTCCGCACCTTCAGTTCCTTTCCTTTGCAAAGCTGTCAAAGGAACATTTGGTTATTTAGCTCCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACCGATGTATATGCTGTTGGAGTTGTTTTATTGGAACTCATAACTGGCCGGAAGGCAATTGAAGCAAAAGGGCCTCCAGGAGAGGAGAACTTGGTCTTGTGGGCTAAACCTTTGCTAAAAAAGGGGAAAGAAGCCATTGAAGAGTTGCTTGATCCTCAACTCAAGTACAGTTTGAAATACTCACATGAAATGGCTCGGATGGTTGAGGCAGCAGCTTCCTGTGTTACAAATGAAGAATCTAGGAGACCTGGCATACATGAGATTCTTGCCATACTGAAAGGTGAACAAGAGCCTGTTTTCTCTAGAAGAAGGAAGTCTGGTTATCTGGGGAATGGATTTGTGATTGATTGTTACCCTCAATTACAACAAACAAATAATGAGATGAAAAGTTACTTGGCTTTGGCAATGCAAGGAGTTCCAGAGTATGAGGATGATGATTATCTTTATGTACGTTAA 1518 0.4209 MMGFSQETETCTDTPPSVSCAVADNFSDYKRFKFNNFLRKMFREFVFACVAVPSGDKNDKKATLEHNKVWLLAESGGCGAELAASADPRSVHSSFRFSFRSQVEIESLDMSSSAAAATVLMVDLEYEAREMKWRRMVSLEKSISPVVNTLIRFSYDEILSATHNFSQGRILGRGGLSCVFRGRVGLLRIAVAIKRLKKDNKECAKAFCRELMIASSLHCTNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGRKKKNVKGGSPLPWSVRYKVAIGIAEAVTYLHYGTERCVVHRDIKPSNILLSSKKIPKLCDFGLASWTSAPSVPFLCKAVKGTFGYLAPEYFQHGKVSDKTDVYAVGVVLLELITGRKAIEAKGPPGEENLVLWAKPLLKKGKEAIEELLDPQLKYSLKYSHEMARMVEAAASCVTNEESRRPGIHEILAILKGEQEPVFSRRRKSGYLGNGFVIDCYPQLQQTNNEMKSYLALAMQGVPEYEDDDYLYVR* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00972 505 SUPERFAMILY Protein kinase-like (PK-like) 144 448 IPR011009 -
Rops9g00972 505 SMART serkin_6 165 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00972 505 FunFam Putative receptor-like serine/threonine-protein kinase 243 461 - -
Rops9g00972 505 ProSiteProfiles Protein kinase domain profile. 165 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00972 505 Pfam Protein kinase domain 166 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00972 505 Gene3D Transferase(Phosphotransferase) domain 1 243 460 - -
Rops9g00972 505 PANTHER OS08G0249100 PROTEIN 133 456 IPR046958 -
Rops9g00972 505 Gene3D Phosphorylase Kinase; domain 1 136 242 - -
Rops9g00972 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Rops9g00972 505 FunFam probable serine/threonine-protein kinase PBL7 126 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00972 Rops-Chr9 15949924 15952756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00972 151 483 Trihelix Transcription Factor Family AT1G70460 39.941 1.08e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops9g00972 Pkinase 7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00972 - - gmx:100808074 750.74