Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00971 ATGGCACTTGCCAATGACAAAATTCCACTTGGTTCAACCATGAGTAGCAAGTTTCAAACTTGTGCTTTTGATGAGACTGCTATGGAGATTACCACTCTGACCTCTCATGGGGTCAATGAGTACCAAAAATCTGTGGTTGAAGAGGAAGATGGCTCACAAAGCACTAATGGGCTAAGCAATGATTCAGCTTCAGCCACAACTCATTCTCCTCCTCTATGTGGCAGTGGAAATGAGTATGTTTATAAGGGTACAAGTTATCAACTTGAAGAAGCAGAATCTTTGATTAATTTCAAAGCCAAAGAGTGCAGCAACCTCATGCAAAGTAGTGAATCTTTGCTTAGCTTTCAGCAGAGCTGGTTGGTCTCCAATGACAACAATTTGCACCAAGGTTATAATCAATGGAATAATCATGTTAGTCCTAGAAGCATCACAGACTGGCGCCTGGTGCAGGATATCAGTTGCTTTCAAACTGCAAGTGGCTATAGCTCCATATTCAATAGTGCAAAAGAGAAGCAACATGGTGAAAGTTCATATGGGTGGCTATACTCTGAACCAAATGTCCCTGTTGATAGCCTGAAGGAGTCAGCAACACAAGAATCAGTCTTGAGGAAGCGTTCTTCTATGGGAGAGAACATGCAAGCTTCCAATGCCAAGAAGCCATGCACAACTGCAAGTAAAACAGCAAAACCTAAGTCAAACCCATCCAAGGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATCCTACAAGAACTTGTACCAAACGGATCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAACTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCATCTCAAAGATGA 966 0.4213 MALANDKIPLGSTMSSKFQTCAFDETAMEITTLTSHGVNEYQKSVVEEEDGSQSTNGLSNDSASATTHSPPLCGSGNEYVYKGTSYQLEEAESLINFKAKECSNLMQSSESLLSFQQSWLVSNDNNLHQGYNQWNNHVSPRSITDWRLVQDISCFQTASGYSSIFNSAKEKQHGESSYGWLYSEPNVPVDSLKESATQESVLRKRSSMGENMQASNAKKPCTTASKTAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKATSYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00971 321 MobiDBLite consensus disorder prediction 45 71 - -
Rops9g00971 321 SMART finulus 240 289 IPR011598 GO:0046983
Rops9g00971 321 MobiDBLite consensus disorder prediction 48 71 - -
Rops9g00971 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Rops9g00971 321 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 47 291 IPR045843 GO:0003700|GO:0006355
Rops9g00971 321 FunFam Transcription factor bHLH83 232 291 - -
Rops9g00971 321 MobiDBLite consensus disorder prediction 192 240 - -
Rops9g00971 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 293 IPR036638 GO:0046983
Rops9g00971 321 CDD bHLH_AtIND_like 235 297 - -
Rops9g00971 321 Pfam Helix-loop-helix DNA-binding domain 244 284 IPR011598 GO:0046983
Rops9g00971 321 Gene3D - 229 291 IPR036638 GO:0046983
Rops9g00971 321 MobiDBLite consensus disorder prediction 192 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00971 Rops-Chr9 15921995 15923429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00971 79 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.638 2.67e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g00971 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00971 - - gmx:106795957 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00971 9 15921995 15923429 Rops9g00971 9 15921995 15923429 ECH
Rops11g03517 11 67190716 67192249 Rops9g00971 9 15921995 15923429 PCT