Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00970 ATGGAGAGTAATCCTCCTCCGTCGTTGGAGGCTCATGATGCAGTTGCAACGCCGGTGGCCGTACGGAGAGCCTTGGAGCTGCTCCAAATGGACGACCTTGATTTGAGAGTCCAAGCTGCTAGGGAAATCCGCCGTCTTACCAAGTCCTCCCACCGTTGCCGCCGTCAGCTCCGTCAAGCTGTGGCCCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCACTCTTCTCGCCTTGCTTAACCTCGCTGTCCAAGACGAAAAGAATAAAATTAACATTGTGGAAGCTGGTGCATTAGAACCGATAGTTAGCTTCCTCAAGTCACAAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTACAACCAACAAACCAATCATTAGTGCTTATGGCACCATTCCTCTTCTTGTGAAAATTCTTAAAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTGTCCAATTTATCAACACACCCTGATAACCTCAACATCATTCTTGAAACAAATCCAATCCCTTCTATAGTCAACCTTCTTAAGACCTGTAAAGAATCCTCAAAAGTAGCTGAAAAATGCTGTGCTTTGATAGAGTCCTTGGTGGGTTATGAGGAGGGCAGAACCGCATTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTTGAAGTTCTTGAAAATGGCACTCCTCAAAGTAGGGAAAATGCAGTTGGAGCACTTTTGACAATGTGCCAAAGTGATAGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACACAAAAGTCTCAGCCAAAAGCACGTACCCTTTTGCAATTACTGAGAGAGTCTCCTTATTCAAGACCTGAAATTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATGTCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTTTGAGACATTTACAGAAAAGGGCTCTTGTATGCACGACAACAAGTGATCTACCTATTACTAGTTGTGCTTCTGAGGTTTCTTCAAAATGA 1131 0.4483 MESNPPPSLEAHDAVATPVAVRRALELLQMDDLDLRVQAAREIRRLTKSSHRCRRQLRQAVAPLVSMLRVDSPESHEPTLLALLNLAVQDEKNKINIVEAGALEPIVSFLKSQNPNLQEYATASLLTLSASTTNKPIISAYGTIPLLVKILKDGSPQAKADAVMALSNLSTHPDNLNIILETNPIPSIVNLLKTCKESSKVAEKCCALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSRENAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTQKSQPKARTLLQLLRESPYSRPEIEPDTLENIVCDIICQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQKRALVCTTTSDLPITSCASEVSSK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00970 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 138 IPR000225 GO:0005515
Rops9g00970 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 227 IPR000225 GO:0005515
Rops9g00970 376 Gene3D - 3 356 IPR011989 -
Rops9g00970 376 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Rops9g00970 376 PANTHER U BOX DOMAIN-CONTAINING 20 300 - -
Rops9g00970 376 SMART arm_5 131 171 IPR000225 GO:0005515
Rops9g00970 376 SMART arm_5 215 256 IPR000225 GO:0005515
Rops9g00970 376 SMART arm_5 172 214 IPR000225 GO:0005515
Rops9g00970 376 SMART arm_5 49 88 IPR000225 GO:0005515
Rops9g00970 376 SMART arm_5 90 130 IPR000225 GO:0005515
Rops9g00970 376 SUPERFAMILY ARM repeat 21 312 IPR016024 -
Rops9g00970 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Rops9g00970 376 FunFam U-box domain-containing protein 4 8 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00970 Rops-Chr9 15860392 15865554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00970 21 298 U-box Gene Family AT2G23140 33.214 1.12e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00970 - - gmx:100793971 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00970 9 15860392 15865554 Rops9g00970 9 15860392 15865554 ECH
Rops11g03518 11 67235788 67239112 Rops9g00970 9 15860392 15865554 PCT