LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g00970	ATGGAGAGTAATCCTCCTCCGTCGTTGGAGGCTCATGATGCAGTTGCAACGCCGGTGGCCGTACGGAGAGCCTTGGAGCTGCTCCAAATGGACGACCTTGATTTGAGAGTCCAAGCTGCTAGGGAAATCCGCCGTCTTACCAAGTCCTCCCACCGTTGCCGCCGTCAGCTCCGTCAAGCTGTGGCCCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCACTCTTCTCGCCTTGCTTAACCTCGCTGTCCAAGACGAAAAGAATAAAATTAACATTGTGGAAGCTGGTGCATTAGAACCGATAGTTAGCTTCCTCAAGTCACAAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTACAACCAACAAACCAATCATTAGTGCTTATGGCACCATTCCTCTTCTTGTGAAAATTCTTAAAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTGTCCAATTTATCAACACACCCTGATAACCTCAACATCATTCTTGAAACAAATCCAATCCCTTCTATAGTCAACCTTCTTAAGACCTGTAAAGAATCCTCAAAAGTAGCTGAAAAATGCTGTGCTTTGATAGAGTCCTTGGTGGGTTATGAGGAGGGCAGAACCGCATTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTTGAAGTTCTTGAAAATGGCACTCCTCAAAGTAGGGAAAATGCAGTTGGAGCACTTTTGACAATGTGCCAAAGTGATAGATGTAAATACAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACACAAAAGTCTCAGCCAAAAGCACGTACCCTTTTGCAATTACTGAGAGAGTCTCCTTATTCAAGACCTGAAATTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATGTCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTTTGAGACATTTACAGAAAAGGGCTCTTGTATGCACGACAACAAGTGATCTACCTATTACTAGTTGTGCTTCTGAGGTTTCTTCAAAATGA	1131	0.4483	MESNPPPSLEAHDAVATPVAVRRALELLQMDDLDLRVQAAREIRRLTKSSHRCRRQLRQAVAPLVSMLRVDSPESHEPTLLALLNLAVQDEKNKINIVEAGALEPIVSFLKSQNPNLQEYATASLLTLSASTTNKPIISAYGTIPLLVKILKDGSPQAKADAVMALSNLSTHPDNLNIILETNPIPSIVNLLKTCKESSKVAEKCCALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSRENAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTQKSQPKARTLLQLLRESPYSRPEIEPDTLENIVCDIICQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQKRALVCTTTSDLPITSCASEVSSK*	377

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops9g00970	376	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	101	138	IPR000225	GO:0005515
Rops9g00970	376	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	183	227	IPR000225	GO:0005515
Rops9g00970	376	Gene3D	-	3	356	IPR011989	-
Rops9g00970	376	Pfam	Armadillo/beta-catenin-like repeat	91	129	IPR000225	GO:0005515
Rops9g00970	376	PANTHER	U BOX DOMAIN-CONTAINING	20	300	-	-
Rops9g00970	376	SMART	arm_5	131	171	IPR000225	GO:0005515
Rops9g00970	376	SMART	arm_5	215	256	IPR000225	GO:0005515
Rops9g00970	376	SMART	arm_5	172	214	IPR000225	GO:0005515
Rops9g00970	376	SMART	arm_5	49	88	IPR000225	GO:0005515
Rops9g00970	376	SMART	arm_5	90	130	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g00970	Rops-Chr9	15860392	15865554	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops9g00970	21	298	U-box Gene Family	AT2G23140	33.214	1.12e-37	141

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g00970	-		-	gmx:100793971	575.474

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops9g00970	9	15860392	15865554	Rops9g00970	9	15860392	15865554	ECH
	Rops11g03518	11	67235788	67239112	Rops9g00970	9	15860392	15865554	PCT

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