Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00967 ATGAGAAAACCTTGTTGTGACAAAGAAAGCATCAACAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTTATTGATTACATCCGAGTTCATGGTGAAGGTTGTTGGCGCTCTATTCCCAAGGCTGCTGGGTTGCATCGTTGTGGCAAAAGCTGTAGGCTAAGATGGTTAAACTACTTAAGACCAGATATCAAACGTGGAATCTTTGCCCAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTCATAGCTGGAAGATTGCCTGGACGTACAGACAACGAGGTGAAGAACTATTGGAATTCTCACATCCGTAGAAAGCTAATAAATATGGGAATTGATCCAAATAACCATAAGCTACACCAAAGCTTTCCACGTCCTCATGCACACCTTGATTCTGCTCCGGTTGCATCATCATCTGAGTCCATGAACAAAAAACAAAGAGACCCTTTCTTCAAATCCAGTGGTACCACGAATGATAAAAGTATTTCATTCACAAAAAGTAGTGATGAAGAAGAAGAAACACCAATTATTTCGTCATCACCCTTGAATCTTGACCTAACCATTGCTTTACCTGTTGTGGAAGACAAGTCGACACCAAATTCTGAGTCCACTAAGACACGGGACACGAATATAGATCTTAACTGTTAA 672 0.4167 MRKPCCDKESINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLINMGIDPNNHKLHQSFPRPHAHLDSAPVASSSESMNKKQRDPFFKSSGTTNDKSISFTKSSDEEEETPIISSSPLNLDLTIALPVVEDKSTPNSESTKTRDTNIDLNC* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00967 223 Gene3D - 68 136 - -
Rops9g00967 223 MobiDBLite consensus disorder prediction 202 223 - -
Rops9g00967 223 FunFam Transcription repressor MYB4 68 134 - -
Rops9g00967 223 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops9g00967 223 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Rops9g00967 223 CDD SANT 71 111 IPR001005 -
Rops9g00967 223 Gene3D - 13 65 - -
Rops9g00967 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Rops9g00967 223 CDD SANT 15 60 IPR001005 -
Rops9g00967 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Rops9g00967 223 MobiDBLite consensus disorder prediction 142 171 - -
Rops9g00967 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 188 - -
Rops9g00967 223 MobiDBLite consensus disorder prediction 201 223 - -
Rops9g00967 223 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Rops9g00967 223 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops9g00967 223 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops9g00967 223 FunFam MYB-related transcription factor 12 65 - -
Rops9g00967 223 SMART sant 65 113 IPR001005 -
Rops9g00967 223 SMART sant 12 62 IPR001005 -
Rops9g00967 223 MobiDBLite consensus disorder prediction 128 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00967 Rops-Chr9 15804384 15806000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00967 2 215 MYB Transcription Factor Family AT4G38620 54.018 6.17e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g00967 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00967 K09422 - gmx:100306391 343.584