Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00963 ATGGGTTGCTGTTTTAGTGCTAAAATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGGATGGTAACAAAGAAGAGGATGGCTTGAAAGGTCAAAGCAGTGGGATCTCCACTCCCACTGCGCCTCCAACTCCTCGGACAGAGGGTGAGATCTTGAACTCATCCAATATGAAGAGCTTCACCTTAAGTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGTGGGTTTGGTTGTGTATTTAAGGGATGGATTGATGAGCATTCACTTGCACCGGTTAGACCCGGGACTGGATTGTTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTTTGCAAGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCATAGAGGATGACCAAAGGCTTTTGGTATATGAGTTTTTGACCAAGGGCAGTTTGGATAATCACTTATTTAGGAGGGGTTCTTATGTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCCAAGGGTCTTGCATATCTTCACAGTGATGAAGCAAAAGTGATATATCGAGACTTCAAAACTTCAAATATATTGCTTGATTCGAATTATAATGCAAAACTCTCTGATTTTGGCTTGGCAAAGGATGGACCAGCTGGTGATAACAGCCATGTCTCCACAAGGGTAATGGGCACATATGGCTATGCTGCTCCTGAATATATGGCCACAGGTCACTTGACCAAAAAGAGTGATGTATACAGCTTTGGGGTGGTTCTCCTTGAAATCATGTCTGGTAAACGTACACTAGACAACAATAGGCCATCCGGGGAGCACAATTTGATTGAATGGGCCAAACCTTACCTCAACAGCAAACGCAGGATCTTCCAAGTTATGGATGCTCGCATTGAAGGCCAATACACGTTGCGTGAAGCAATGAAAGTAGCTAACCTTGCAATTCAATGCCTTTCTGTGGAACCAAGATTTAGACCAAAAATGGCAGAGGTTGTGATTGCATTGCAAGAACTTCAGTGTTCTGATGACACAGCTGGAGGAGTGGGAAGTTCTCGTGATCAAACTGTCAAAAGGAATGGTCGTAGCTCAAGTAGCACTGGCCATAGACAACATAGAAGTAAACAACGTGAAACAACATATAAGTAA 1209 0.4376 MGCCFSAKIKAESPPRNGLSSKDGNKEEDGLKGQSSGISTPTAPPTPRTEGEILNSSNMKSFTLSELKTATRNFRPDSVVGEGGFGCVFKGWIDEHSLAPVRPGTGLFIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCIEDDQRLLVYEFLTKGSLDNHLFRRGSYVQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDNSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRTLDNNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYTLREAMKVANLAIQCLSVEPRFRPKMAEVVIALQELQCSDDTAGGVGSSRDQTVKRNGRSSSSTGHRQHRSKQRETTYK* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00963 402 SUPERFAMILY Protein kinase-like (PK-like) 49 353 IPR011009 -
Rops9g00963 402 MobiDBLite consensus disorder prediction 364 402 - -
Rops9g00963 402 Gene3D Transferase(Phosphotransferase) domain 1 160 376 - -
Rops9g00963 402 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Rops9g00963 402 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g00963 402 MobiDBLite consensus disorder prediction 32 55 - -
Rops9g00963 402 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Rops9g00963 402 FunFam Probable serine/threonine-protein kinase PBL8 160 375 - -
Rops9g00963 402 PANTHER OS01G0588500 PROTEIN-RELATED 40 360 - -
Rops9g00963 402 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Rops9g00963 402 Pfam Protein tyrosine and serine/threonine kinase 78 354 IPR001245 GO:0004672|GO:0006468
Rops9g00963 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Rops9g00963 402 MobiDBLite consensus disorder prediction 364 384 - -
Rops9g00963 402 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00963 Rops-Chr9 15757091 15760300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00963 1 364 Glycoside Hydrolase AT3G07070 45.600 1.16e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops9g00963 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00963 - - gmx:100775335 722.235