Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00960 ATGGCAATTGGGTCATTGGAGGTGCTGCTGGTGAAAGCAAAGGGTCTTCAAGAAACTGATATCTTTGCTCATATGGATCCGTATGTTCTGTTACAATACAAAGGTCAAGAGCGCAAAAGCAGTGTACTTCATGAGGGGGGACGCAATCCCGTATGGAATGAGAAATTTGTATTCAGAGTGGAATACCCTGGTTCAGGTGGCCAATACAAGCTCAACCTTATAATCAAGGACAAGGATGTGTTTTCTAAAGATGACTTTGTTGGCCAGGCCACAATCTATGTAAAGGATTTATTGGAAGAAGGATCGGAGAATGGATCAGCTGAGCATCCTCCTCGCAAGTATAGTGTGGTTCGAGCTGACCAATCTTACTGTGGTGAAATTGAAGTTGGTCTAACTTTCACCCGAAAGGAAGAGGAATATCTGGACCGTGACATTGGAGGATGGAAGGAAAGTGAGTATTAG 462 0.4372 MAIGSLEVLLVKAKGLQETDIFAHMDPYVLLQYKGQERKSSVLHEGGRNPVWNEKFVFRVEYPGSGGQYKLNLIIKDKDVFSKDDFVGQATIYVKDLLEEGSENGSAEHPPRKYSVVRADQSYCGEIEVGLTFTRKEEEYLDRDIGGWKESEY* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00960 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Rops9g00960 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
Rops9g00960 153 Gene3D C2 domain 2 135 IPR035892 -
Rops9g00960 153 Pfam C2 domain 4 104 IPR000008 -
Rops9g00960 153 SMART C2_3c 5 106 IPR000008 -
Rops9g00960 153 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Rops9g00960 153 PANTHER C2 DOMAIN-CONTAINING 3 137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00960 3 108 C2H2 Transcription Factor Family AT4G21160 34.906 3.11e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00960 - - gmx:100500493 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00960 9 15732713 15735379 Rops9g00960 9 15732713 15735379 ECH