Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00955 ATGGCAGTGGTCAACATCATTAGCATCTTTACCATCTTGACTCTTGTTCTGACTTCAACAGAAGCCAGAATACCCGGTGTCTACACCGGCGGTGAGTGGCAAACCGCTCACGCCACCTTCTACGGTGGCAGCGACGCTTCTGGAACAATGGGTAAGTTACCTATGTACCATTTTTCCACGGTTCCATGCAGGAGGAAGGGAGGGATGAGGTTCACGATCAACGGCTTCCGTTACTTCAACTTGGTTGTGATCACTAACGTTGCGGGTGCAGGGGATATCATGAGGACGAGCGTTAAAGGTTCACAGACTGGTTGGATGAGCATGAGCCGTAACTGGGGTCAGAATTGGCAGTCAAACGCTGTTTTGGTTGGTCAGTCACTGTCTTTCAGGGTCACAGGCAGTGACCGACGCACTTCCACCTCATGGAACATTGTTCCCTCCAATTGGCAATTTGGACAAACCTTCACCGGCAAAAATTTTAGGGTCTAG 489 0.501 MAVVNIISIFTILTLVLTSTEARIPGVYTGGEWQTAHATFYGGSDASGTMGKLPMYHFSTVPCRRKGGMRFTINGFRYFNLVVITNVAGAGDIMRTSVKGSQTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00955 162 Gene3D - 69 160 IPR036749 -
Rops9g00955 162 PANTHER EXPANSIN-A15 20 55 IPR002963 GO:0009664
Rops9g00955 162 Pfam Expansin C-terminal domain 69 146 IPR007117 -
Rops9g00955 162 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 78 157 IPR007117 -
Rops9g00955 162 FunFam Expansin 68 160 - -
Rops9g00955 162 SUPERFAMILY PHL pollen allergen 65 157 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00955 Rops-Chr9 15672926 15674911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00955 3 51 Expansin Gene Family AT2G39700 59.184 2.18e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00955 - - nnu:104597175 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01718 8 38396209 38398771 Rops9g00955 9 15672926 15674911 ECH
Rops9g00955 9 15672926 15674911 Rops9g00955 9 15672926 15674911 ECH