Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00947 ATGGCTTCTCATTGGTGGTGTTACAGGTGCAATCGATTTGTTAGGGTATGGAGGCAAAACATGCCGATTTGTCCCGATTGCAACAGTGGATTTGTCGAACAAATCCAACATCCAACCAGGTCTGTCCACGTGGACGGGCTTCGCCGGAGATTTGGTTCTGATCATAATTCTCGTCCAACTCACCGGCGGCATTGCAGAAACAGCGGCGGTGATGACCGTTCACCGTTCAATCCAGTCATCATGCTCCGCGGTGGTGGATCATCGGAGGGGACAAGTCGCGAGGGAGGAGTAAGTCGCGGCTTCGAGCTTTTCTACGACGACGGTGCCGGTTCCGGTCTCCGACCACTTCCTCCGAGGATGTCGGAGTTTCTTCTAGGATCTGGATTCGACAGGGTGATGGAACATCTTTCCCACGTTGAGACCAACGGTGGTGTTAGGAGACAAGACGAGCACCTTCCGGCATCAAAAGACGCCGTGGAATCTTTACCGGCGATTGAGATTAACGCCATCCACATGGCCACGGAATCACACTGCGCCGTTTGCAAGGAACCCTTTGAACTTGGCATAACTGCAAAGGAAATGCCATGCAAACATATTTACCACCCTGAATGTATCCTTCCATGGCTTGCAATTCGAAACTCTTGCCCCGTTTGTCGCCATGAATTACCCTCTGAACCAAACAACACACGTTTAGCACCAGATCAGAACCAAGAAGAGAATCTGGGGTTGACAATTTGGAGGTTACCGGGTGGTGGTTTTGCCGTGGGAAGGTTTTCTGGTGGAAGAAGAGGCACTGAAAGAGAGCTTCCTGTTGTTTACACAGAAGTGGATGGTGGGTTTGACAATATTGGTGAACCAAGGAGGATTTCTTGGTCATTGTCATCATCTAGAGCAAGGGAAAGAAGTGGTGGGTTACGAAGAATGTTTAACAATTTGTTTGGTTGCTTTAGAGGTGGTGATAGGCCTCAACACTATGCTTCTAATAGAGAATATCCAATACCAATGAGCATGGTGAGGAGTAATGGTGCATCTAGTACCAATGTGGATCCCGCTCGACGTTCACGTAGGACTTGGTCTATGGATGTAAATAGTGGAATGAGACCATGGTAA 1110 0.4892 MASHWWCYRCNRFVRVWRQNMPICPDCNSGFVEQIQHPTRSVHVDGLRRRFGSDHNSRPTHRRHCRNSGGDDRSPFNPVIMLRGGGSSEGTSREGGVSRGFELFYDDGAGSGLRPLPPRMSEFLLGSGFDRVMEHLSHVETNGGVRRQDEHLPASKDAVESLPAIEINAIHMATESHCAVCKEPFELGITAKEMPCKHIYHPECILPWLAIRNSCPVCRHELPSEPNNTRLAPDQNQEENLGLTIWRLPGGGFAVGRFSGGRRGTERELPVVYTEVDGGFDNIGEPRRISWSLSSSRARERSGGLRRMFNNLFGCFRGGDRPQHYASNREYPIPMSMVRSNGASSTNVDPARRSRRTWSMDVNSGMRPW* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00947 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 54 223 - -
Rops9g00947 369 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Rops9g00947 369 SUPERFAMILY RING/U-box 158 226 - -
Rops9g00947 369 MobiDBLite consensus disorder prediction 338 361 - -
Rops9g00947 369 MobiDBLite consensus disorder prediction 337 369 - -
Rops9g00947 369 Pfam zinc-ribbon 5 35 IPR039525 GO:0061630
Rops9g00947 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Rops9g00947 369 MobiDBLite consensus disorder prediction 48 95 - -
Rops9g00947 369 Pfam Protein of unknown function (DUF1117) 242 328 IPR010543 -
Rops9g00947 369 SMART ring_2 178 218 IPR001841 -
Rops9g00947 369 FunFam E3 ubiquitin-protein ligase RING1-like 139 225 - -
Rops9g00947 369 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00947 Rops-Chr9 15425696 15427441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00947 153 225 C3H Transcription Factor Family AT5G15820 51.351 1.39e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00947 K11982 - gmx:100807324 461.455