Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00939 ATGACAGGGTTTGGTACATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCAAGTGATTGTGTATTTGCTCCTTACTTCTCTTATGATCAGGCTGCAACCCATTTTGCAGCAGTGCATAAGGTTTATGGTGCTAGTAATGTCTCTAGGCTATTGTCACATCTTCCAATCCAGAATAGAAGTGATGCTGCCATCACCATATCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATATGGTTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGCCAGCTTGCAAGAGGAGATAGATGTTCTTGGAAATCTAATGGAAAATTCCACAGTTAGTGTTGTCAATTGTGGTAGTGTCCAAGCACCAATGAACTCAAACAATGAAATACAATATCTTCTACAACATGATGCTACAAGGACACAATATTATCAAAATCAAGTGGCTAATTTTCTTTCACAAGAGGGAAGTGCCACAGTCTACCAAAGTTTCAATCCACAGGTGGATATAGAGGTTCCCAATGCACATGGACTAGAAGAGCCTTTATTTGGTGATTCCAACTCCAATTCGTTAGAGAAGTTCATATCTGGAATTGACCAAGAGGTCTTCATGAACCATCCATGGTTCAAGCATAATGCAGAAATAAAGAACTAG 657 0.4049 MTGFGTSCGACKFLRRKCASDCVFAPYFSYDQAATHFAAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQQQVASLQEEIDVLGNLMENSTVSVVNCGSVQAPMNSNNEIQYLLQHDATRTQYYQNQVANFLSQEGSATVYQSFNPQVDIEVPNAHGLEEPLFGDSNSNSLEKFISGIDQEVFMNHPWFKHNAEIKN* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00939 218 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops9g00939 218 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Rops9g00939 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00939 Rops-Chr9 15237465 15238213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00939 1 114 AS2 family AT5G06080 70.175 1.27e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops9g00939 LOB 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00939 K13945 - gmx:100787638 320.857