Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00937 ATGGCTAATCGTTGGTGGGCTGGGAACGTGGCGGCGAGACCAACGGAGCCAAACCCGTCTTCTCCATCGGTTCAACCGGAGGAAGAGCTGAACCGGGTCGGGTCAAGAAGAGAGCAAGAATTCATGGATGGCAACAACAATAATAGTAACAGTAACAGCAACGCCACCCCAACAAACAGTGGCAATAGTAACACCAACGTTAAATCCGGCGGGGACGACGATAACAATAATGAGCGTGAGACCGATGACCAGAACCCCAGCGGTGGCCGGAGACCACGTGGAAGGCCGCCAGGGTCGAAGAACAAGACGAAACCGCCGGTGGTTATAACAAAAGAGAGTCCAAACGCCCTTCGGAGCCATATATTGGAAATCGGCGGCGGAAGTGATGTTGCTGAGTGCATCGCCACCTTCGCCAACCGCCGTCACCGTGGGGTGTCGGTTCTCAGCGGAAGCGGTGTTGTCACCAATGTTACTCTCCGGCAACCGGCAGCGCCTGGTGGAGTCATCACACTTCAGGGAAGGTTTGAAATTTTGTCTCTCTCCGGCGCGTTCTTGCCGTCACCTTCTCCGCCGGAGGCTTCCGGACTCACGGTGTACTTAGCCGGCGGTCAGGGTCAGGTCGTCGGTGGCACGGTGGTGGGGCCTTTAGTAGCTTCAGGGCCTGTTATGGTGGTTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTACCCTTAGATGATGAACAAGGAGAGGAAGATATGCAATTGCAGCAACATCAAGAGGTGAATGAAGCAGCTAATGCAACTCCTAATTCTTCTCAGGGTTTGGATGAACAACAACAGGTTTCAGTGCCAGTTTACAATTTGAATCCAAATTTGATGCCAAATGGTCAAATGCCAAATGATGTGTTTTGGGGTCATCATCCACCTCGCCCTCCTCCCCCTTCTTTTTGA 936 0.5256 MANRWWAGNVAARPTEPNPSSPSVQPEEELNRVGSRREQEFMDGNNNNSNSNSNATPTNSGNSNTNVKSGGDDDNNNERETDDQNPSGGRRPRGRPPGSKNKTKPPVVITKESPNALRSHILEIGGGSDVAECIATFANRRHRGVSVLSGSGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPSPSPPEASGLTVYLAGGQGQVVGGTVVGPLVASGPVMVVAATFANATYERLPLDDEQGEEDMQLQQHQEVNEAANATPNSSQGLDEQQQVSVPVYNLNPNLMPNGQMPNDVFWGHHPPRPPPPSF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00937 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 301 IPR014476 GO:0003680
Rops9g00937 311 MobiDBLite consensus disorder prediction 253 276 - -
Rops9g00937 311 Gene3D - 117 258 - -
Rops9g00937 311 FunFam AT-hook motif nuclear-localized protein 117 245 - -
Rops9g00937 311 MobiDBLite consensus disorder prediction 14 28 - -
Rops9g00937 311 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 242 - -
Rops9g00937 311 ProSiteProfiles PPC domain profile profile. 114 251 IPR005175 -
Rops9g00937 311 MobiDBLite consensus disorder prediction 72 89 - -
Rops9g00937 311 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 230 IPR005175 -
Rops9g00937 311 MobiDBLite consensus disorder prediction 243 276 - -
Rops9g00937 311 MobiDBLite consensus disorder prediction 40 71 - -
Rops9g00937 311 MobiDBLite consensus disorder prediction 1 109 - -
Rops9g00937 311 CDD DUF296 118 201 IPR005175 -
Rops9g00937 311 PIRSF ESCAROLA 29 310 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00937 Rops-Chr9 15194128 15196169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00937 90 307 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.276 4.28e-72 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00937 - - aprc:113874473 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03549 11 67833445 67835546 Rops9g00937 9 15194128 15196169 PCT