Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00932 ATGTCACACCTTCAAGCACCAGTTGGAGATGGCAACAACAATTACTCTTGGGAAGAAAGGGCTTTCGCTGAAGATGCTGTTAGGGTACTTGGTGGGAGCATATGGCCTCCAAGATCTTACTCTTGTACCTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGAAGGGATAGGGCTAGGCTTAAACAAAATCTTAGCCCTCATAATGAAGTCATTGGCCTTGATCATCATCACAAAAATGATTACAATTTCAAGTCATCAGGTAATCATTTTTTCTCTTCCCAGATAGATTGTTGTCCTAATCCTTATTCTCCTCCTAGCTCTGCAACTGCAATTACAACAAAAAGACTCTCACCTTCTAGGCTCTTTACTATCTCCACAAGAGAAAATTGTTGTCAGCATACTATATCATCAGCACCATATTCTTCTTCAATTATCTTGGGAAAGCAGATGGGGTCTCCCAATTCAGAACCAGAAGTGGTAGTCAATGCAAAAGAAGACAATTTTAATGGCTTGGGTTGTGATAATTATGTTGAAACAAGTTTGTCTGTGGGACTGACTTCCATGTTTGGACAAAAATCACCAACAGTTTCTTGTGTGGAGGACAAAGCCATCATCAGTTCTAAAAGGCTAAAGACTACCTTTTCTTCACTGCCTATTTTCCTCAAGCCATGTTCAAATGATGGAATGGAAGATTTAGATCTTGAACTCAGGCTAGGGAAACAACAGAAAGTTAAGTAG 765 0.3987 MSHLQAPVGDGNNNYSWEERAFAEDAVRVLGGSIWPPRSYSCTFCKREFRSAQALGGHMNIHRRDRARLKQNLSPHNEVIGLDHHHKNDYNFKSSGNHFFSSQIDCCPNPYSPPSSATAITTKRLSPSRLFTISTRENCCQHTISSAPYSSSIILGKQMGSPNSEPEVVVNAKEDNFNGLGCDNYVETSLSVGLTSMFGQKSPTVSCVEDKAIISSKRLKTTFSSLPIFLKPCSNDGMEDLDLELRLGKQQKVK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00932 254 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Rops9g00932 254 Pfam C2H2-type zinc finger 40 64 - -
Rops9g00932 254 Gene3D Classic Zinc Finger 37 95 - -
Rops9g00932 254 SMART c2h2final6 40 62 IPR013087 -
Rops9g00932 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Rops9g00932 254 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Rops9g00932 254 PANTHER OS07G0101800 PROTEIN 12 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00932 Rops-Chr9 15134446 15135210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00932 12 67 C2H2 Transcription Factor Family AT4G17810 64.286 6.89e-23 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g00932 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00932 - - lang:109340014 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01764 8 39544377 39545297 Rops9g00932 9 15134446 15135210 ECH
Rops9g00932 9 15134446 15135210 Rops9g00932 9 15134446 15135210 ECH
Rops11g03553 11 67910489 67911316 Rops9g00932 9 15134446 15135210 PCT