Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00917 ATGGCTCCTTCTTCAGATATCAACCATCTTTCTCATCCTTGTATATATGGGGATTTTATTTCTTCTCACTCAGAGAGAAAATCTGGTTTCATGAAATGGCTTAGTAGACTTTTCAAAGGTGGGTCCAATAGAGCAAGGGGTGGTGGTCGGCATCTGCATGAGCCTGCTCCATCCAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATATGGGCCATGCAATGGCACTTTCTTCAGCTGAAGATTTAAAGAGACCAAATGCCCATCAAGGATATAGTTGGGGGCCAGACCCTGATGAAGATTACTCAAGGCCATTTCAGGATACCCTGAACTCATCTGCATACCCTCCATATGCTCCTGCACCATATTATCCCAACGGATATAGAAGAATATGTGGTGGTTGCAACCAGGAGATAATCTATGGAAATTGTTTGGGCTGCATGGATACTTATTTTCATCCAGATTGCTTTCGCTGTCACTCTTGTGGTCACCCCATCACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGACCTGTTTTAAAGAGTTGACTCACCCAAAGTGTGAAGTTTGCTACCAATTTATTCCTATAAATGGTGCTGGTTTGATTGAGTATAGGTGCCACCCATTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCGGAATATAAAATACTATAGATTGGAAGATGGACGAAGTTTGTGCCTGGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAACCTCTATACCATTCCATCAGAGATTATTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTTGTTGAGAGAGAAGCACTTAATGAAGCTATTGTTGGGGAGAAGAATGGTTTTCATCACTTGCCAGAAACAAGGGGCTTATGCCTTTCAGAAGAGCAGACAGTCACCAGTATACACAGAAGGTCAAGAATTGGTGGCCATCGACTAATAGGAATGAGAACTCAACCTCAAAAGCTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTACTTTATGGTCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCCTGGTTACGCCTTAAAGGTTATCGCAACCTTAATCCTGAAGTAGAGGAAGGCATCTGTCAGGTTCTTTCATATATGTGGCTTGAGACAGAAGTAATGCCAAGTTCTCAAAACATGGCATCAACATCCTCAGCTGCTTCCTCCTCCTCCTCCTCCTCCTCAAAGAAAGGTGCCAAGTCTCATGTTGAAAATCAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGGGCAGCTAATGAAGCTGTTAATAAATATGGATTACGTTGTACCCTTGAGCATATTCGTTTGACTGGTTTTTTCCCAGTGTAA 1497 0.4242 MAPSSDINHLSHPCIYGDFISSHSERKSGFMKWLSRLFKGGSNRARGGGRHLHEPAPSRALDDRARAQKEKEDMGHAMALSSAEDLKRPNAHQGYSWGPDPDEDYSRPFQDTLNSSAYPPYAPAPYYPNGYRRICGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCGHPITEREFSLSGKHPYHKTCFKELTHPKCEVCYQFIPINGAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRSRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLETEVMPSSQNMASTSSAASSSSSSSSKKGAKSHVENQLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGFFPV* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00917 498 Pfam LIM domain 135 188 IPR001781 -
Rops9g00917 498 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 223 - -
Rops9g00917 498 FunFam Protein DA1-related 2 124 188 - -
Rops9g00917 498 MobiDBLite consensus disorder prediction 44 76 - -
Rops9g00917 498 MobiDBLite consensus disorder prediction 47 76 - -
Rops9g00917 498 SMART lim_4 134 186 IPR001781 -
Rops9g00917 498 Pfam Protein DA1 284 493 IPR022087 -
Rops9g00917 498 PANTHER PROTEIN DA1-RELATED 2 33 497 IPR045218 -
Rops9g00917 498 Gene3D Cysteine Rich Protein 129 194 - -
Rops9g00917 498 MobiDBLite consensus disorder prediction 423 443 - -
Rops9g00917 498 CDD LIM 162 226 - -
Rops9g00917 498 ProSitePatterns LIM zinc-binding domain signature. 135 169 IPR001781 -
Rops9g00917 498 CDD LIM_DA1 135 187 - -
Rops9g00917 498 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 160 - -
Rops9g00917 498 ProSiteProfiles LIM domain profile. 133 193 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00917 Rops-Chr9 14921733 14926384 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops9g00917 DA1-like 2.5e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00917 - - gmx:100784976 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00917 9 14921733 14926384 Rops9g00917 9 14921733 14926384 ECH