Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00914 ATGGGGGAAATTTTCGAGTCCTGTCATGTCCCACAACAAAGCAGAAGGAACAAGCTCCGAGTAATGGTCCAAACCCATCAACCACAATCATTAGCTCTACCCTTTGAACCAAATCCAGCTTCCTCACCATTTAATAACCCAAACACCCTTTTTAGCAACTTCAACTCCCTCACAACTCCCCCATTTTTACACTCACTACCAAAAAGTTCATGTTCATCTTCACATGTTGAACAGCCTCCAAGTTTTCACAGTCTTCAACCCCATATGGTGTCCCAAGGACCATGCAATGAATTGAGAAACTGGGTTCCAATGGGTCCCTTTACTGGTTATGCTTCCATCTTAAAACGGTCAAGGTTTTTGAAGCCTGCTCAACAGCTTCTTGAAGACTTTTGTGGTAGTGTTTTGGATCCTCCAACATTGGATAGTATGAGCCAAAATGACAATCATAAAGACCCCATTATTTGCAGCTTCAGGGATGCAATTCAGCAGCATCAGTGGAGGGATTCAAGACTCGCATGCATGCTAGAGGAGGTATATAACAAGTATATCCTGTACTGCCAGCAGATGCAATCAGTAGTGGCATCATTTCAAAAAGTTGCTGGGCTTGGAAATGCCACTCCTTATATATCATTTGGTATCAAAACCATTTCTAAGCATTTTGGATGTTTGAAACATGCTATATATGATCAACTTCAGTTTACAAGCAAGAGTAAACCTGCTGCTAACAATTTTGGTGAAAGGGAAATTTCAAAGTGTTCCACATTTGAGAAATGTCTTCGTATACCAGAATCAGTGCAGAACTTACGCTCTGTCCAACCTGTTTTAAGATCCCAAAGAGGGCTTCCAGATCATGCTGTAGCTTTGCTGAAGAGATGGCTCTTTGAACACTTCTTACACCCTTATCCTACTGATTCAGAAAAGAATAGATTGGCTCAAAAAACTGGTCTTTCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTGAGAATTTGGAAGCCCATGGTGGAAGAGATGCACCTGCTTGGGGAACAGCAGGCTCATACATCAGAAGTGAACCATAAAGTGAGCATGCCTGCTGTTGGCCCATTAGCTTCATCACACAAGCCCATGTGA 1119 0.4209 MGEIFESCHVPQQSRRNKLRVMVQTHQPQSLALPFEPNPASSPFNNPNTLFSNFNSLTTPPFLHSLPKSSCSSSHVEQPPSFHSLQPHMVSQGPCNELRNWVPMGPFTGYASILKRSRFLKPAQQLLEDFCGSVLDPPTLDSMSQNDNHKDPIICSFRDAIQQHQWRDSRLACMLEEVYNKYILYCQQMQSVVASFQKVAGLGNATPYISFGIKTISKHFGCLKHAIYDQLQFTSKSKPAANNFGEREISKCSTFEKCLRIPESVQNLRSVQPVLRSQRGLPDHAVALLKRWLFEHFLHPYPTDSEKNRLAQKTGLSRCQVSNWFINARVRIWKPMVEEMHLLGEQQAHTSEVNHKVSMPAVGPLASSHKPM* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00914 372 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
Rops9g00914 372 SMART prehox3 108 229 IPR006563 -
Rops9g00914 372 SMART HOX_1 275 339 IPR001356 GO:0003677
Rops9g00914 372 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Rops9g00914 372 CDD homeodomain 276 336 IPR001356 GO:0003677
Rops9g00914 372 Gene3D - 278 358 - -
Rops9g00914 372 SUPERFAMILY Homeodomain-like 279 342 IPR009057 -
Rops9g00914 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 344 - -
Rops9g00914 372 Pfam Associated with HOX 113 227 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00914 Rops-Chr9 14910183 14913532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00914 99 343 Homeobox Transcription Factor Family AT5G02030 46.097 6.23e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops9g00914 POX 5.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00914 - - adu:107457744 426.402