Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00896 ATGGGAGGTAACCGTGGAGTCCTTTCCAGCGAGTGTGACGCCGACGACTCGGGGTCCTTTTCCAATGCTACAACATTACAAGAACTTGAGGTGAAGGGTGACCAGCAAAGGCTCATATTTCCTGGGAAGCAATTGAAGGATGGTCGCACTCTTGCAGATTACAACATTCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGCCGATCTTCTGGTCGCTATGGTGTTTTTCCTGCAAGAATGGGTTCTCTCCTCCGGCGTCGTAATAGCCATCGTTGTGTAGCTGATAACCAGAGGCATGGCAGTGGAGTGCATGACGGTGTGTAG 324 0.5093 MGGNRGVLSSECDADDSGSFSNATTLQELEVKGDQQRLIFPGKQLKDGRTLADYNIQKESTLHLVLRRSSGRYGVFPARMGSLLRRRNSHRCVADNQRHGSGVHDGV* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00896 107 PRINTS Ubiquitin signature 48 69 IPR019956 -
Rops9g00896 107 PRINTS Ubiquitin signature 27 47 IPR019956 -
Rops9g00896 107 PANTHER UBIQUITIN 30 71 - -
Rops9g00896 107 SUPERFAMILY Ubiquitin-like 29 75 IPR029071 -
Rops9g00896 107 Pfam Ubiquitin family 27 68 IPR000626 GO:0005515
Rops9g00896 107 SMART ubq_7 6 67 IPR000626 GO:0005515
Rops9g00896 107 Gene3D - 15 72 - -
Rops9g00896 107 ProSiteProfiles Ubiquitin domain profile. 27 71 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00896 Rops-Chr9 14652285 14652718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00896 8 94 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 45.977 5.31e-18 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00896 K02927 - ppp:112295416 75.485