Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00886 ATGCTGGATACTGAGGACAAGTTTCACGATGTTGTTGTTGACATAGACAATGGTTGTTGTCATCGGAGTTGTGCCGGCGGCGGAGGTTCTGACGTCGGTGACCGGTCAGATGAGGAGCAAAGATCCTCCCATGATTCTGGTACTGAGATTGTGGGAGTGTGTGAAAAAGAGAGAGGATCTTCTGCATCAGAGTGTTCTGTTGAGGTGGATCTGGACGGTGCAGTAACTGATGCTAAGGTGCATTTGGCTAAGGTTGAGAGGGATTGTAGAATTTGTCATCTTAGCATGGATATGACCAATCATGAATCTGGAACTCCCATTGAGTTGGGATGTTCTTGTAAGGATGATTTGGCTGCTGCACATAAACAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAATAAAACTTGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGTGCCATTGAAGTTCAAATGACAGAACAATGGAATGAGGCAAATGATCCCTCTATGGCACCACCAAATGGACCTGCACCCCCTGCAGAAACTCGAAATTTCTGGCAGGGTCATCGTTTCTTGAATTTCCTACTAGCCTGTATGGTCTTTGCCTTTGTCATATCCTGGCTTTTCCACTTCAATGTTCCCTCTTGA 639 0.457 MLDTEDKFHDVVVDIDNGCCHRSCAGGGGSDVGDRSDEEQRSSHDSGTEIVGVCEKERGSSASECSVEVDLDGAVTDAKVHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQWNEANDPSMAPPNGPAPPAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00886 212 MobiDBLite consensus disorder prediction 27 48 - -
Rops9g00886 212 ProSiteProfiles Zinc finger RING-CH-type profile. 81 147 IPR011016 GO:0008270
Rops9g00886 212 SMART ringv_2 88 141 IPR011016 GO:0008270
Rops9g00886 212 Pfam RING-variant domain 89 140 IPR011016 GO:0008270
Rops9g00886 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 149 IPR013083 -
Rops9g00886 212 PANTHER ZINC FINGER, RING-CH-TYPE 20 211 - -
Rops9g00886 212 SUPERFAMILY RING/U-box 86 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00886 Rops-Chr9 14425474 14429864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00886 34 212 C3H Transcription Factor Family AT5G05830 62.778 1.64e-74 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00886 - - gmx:100818979 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00886 9 14425474 14429864 Rops9g00886 9 14425474 14429864 ECH