Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00885 ATGACCGAAGTGGACCGTTCCGCCGAACCAATCACTCACAATGGCCTCACCGCCACGGAGCCTGTAGGAGTCGGCGGCGAGGAGTCCGAACTTGCTGGCGGCGATGTTGAGGTGGCGGTGGTTGGCGACAGTTGCGTCGCCGGAAAAGTGAAAGGACCTTGGTCCCCGGAGGAGGACGCAGTGTTGAGCCGATTAGTGGCACAGTTCGGGGCGAGGAATTGGAGCATGATCGCCCGGGGAGTTCCCGGTCGTTCCGGCAAGTCTTGCCGGCTCCGATGGTGTAATCAGTTAGACCCTTGCGTGAAACGCAAGCCCTTCACTGAGGAAGAGGACAGTATCATAATTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCAAGGCTTCTTCCAGGTAGAACAGATAATTCTATCAAGAATCATTGGAATTCTACACTGAAGCGCAGGTGTGTGGAACTGGGAAGATATGTCCCCGCACATGCTGACGTGATGGAAGATGGTAGCTTTGAGAAAACAAAGGCGTCATCTGAAGAAACCATGTCAATTGGGGATATCAATTCATTGAATCCTACCAGAAATGTCATGATGGATAATGAGATTAAACAGCATGAAAATAAACCTCGAAGAAAAGATGGTGCTGAAGTGGAGGGACATCCTACCCTTTATCGGCCAATAGCACGCGTTAGTGCATTTAGTGTTTATAATCCTCCAGGCAGGCCAACAACTGGATTGTCAAAGATGATCCCAAGGCAGAGCCCTCTGATGCAATCCCTCAAGCCACAGGTAGGAGCCTGCAATTTATTTGATGGTATTGGATGCGAGCCCACGGTTCCATTGCAATGTGGTCATGGTTGCTGTGGTGCAGAATTGAGGGAAAACCATTCTCGTGGTTCACTGTTAGGTCCCGAGTTTGTTGACTATTTGGAGTCTCCCTCTTTCTCAAGTCATGAATTGGTTTCAATAGCCACAGACTTGAACAATATGGCTTGGATCAAGAGTGGCCTTGAGAATCATGGTGCCGGAGTAACTGAGAACACTGCAAACTTGACAGCATCCCAAGGGGCTGCCACTGCCCCACAAGCAAGCTTCTTAGGACAAGGTCTAAAGAGTAACTACAAACAATTTGAGGAGGGACCTGGGAAGTTTTTGGGTGCGATGCAGGAAGTGTTATCAACCAAAATGCCTAGGCAACATTTTGCAATGCCTGCAGAAGTTTGA 1224 0.4926 MTEVDRSAEPITHNGLTATEPVGVGGEESELAGGDVEVAVVGDSCVAGKVKGPWSPEEDAVLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDSIIISAHAIHGNKWAAIARLLPGRTDNSIKNHWNSTLKRRCVELGRYVPAHADVMEDGSFEKTKASSEETMSIGDINSLNPTRNVMMDNEIKQHENKPRRKDGAEVEGHPTLYRPIARVSAFSVYNPPGRPTTGLSKMIPRQSPLMQSLKPQVGACNLFDGIGCEPTVPLQCGHGCCGAELRENHSRGSLLGPEFVDYLESPSFSSHELVSIATDLNNMAWIKSGLENHGAGVTENTANLTASQGAATAPQASFLGQGLKSNYKQFEEGPGKFLGAMQEVLSTKMPRQHFAMPAEV* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00885 407 ProSiteProfiles Myb-like domain profile. 51 97 IPR001005 -
Rops9g00885 407 Gene3D - 50 102 - -
Rops9g00885 407 MobiDBLite consensus disorder prediction 1 29 - -
Rops9g00885 407 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Rops9g00885 407 SUPERFAMILY Homeodomain-like 48 144 IPR009057 -
Rops9g00885 407 FunFam MYB transcription factor 51 102 - -
Rops9g00885 407 Gene3D - 105 151 - -
Rops9g00885 407 SMART sant 50 99 IPR001005 -
Rops9g00885 407 SMART sant 102 150 IPR001005 -
Rops9g00885 407 CDD SANT 53 95 IPR001005 -
Rops9g00885 407 FunFam Transcription factor MYB44 105 151 - -
Rops9g00885 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Rops9g00885 407 Pfam Myb-like DNA-binding domain 51 97 IPR001005 -
Rops9g00885 407 Pfam Myb-like DNA-binding domain 103 147 IPR001005 -
Rops9g00885 407 MobiDBLite consensus disorder prediction 176 193 - -
Rops9g00885 407 MobiDBLite consensus disorder prediction 173 193 - -
Rops9g00885 407 PANTHER MYB PROTEIN-RELATED 51 202 - -
Rops9g00885 407 CDD SANT 105 148 IPR001005 -
Rops9g00885 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 97 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00885 Rops-Chr9 14413457 14417359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00885 23 374 MYB Transcription Factor Family AT3G55730 46.237 1.87e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g00885 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00885 K09422 - gmx:100781228 613.994