Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00872 ATGGATTTGGAAACCCTTTATTCTCCTTGTTTTGTGTCAAATTCAAATTGGTTTGTCCAAGAGAGCCACCACAGCACAGAATGGAGTAGAGAAGATAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGACACTCCAGACAGATGGCTTAAAGTGGCAGCCATGATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTCAGTGATATAGAAGCAGGGCGTGTTCCCATTCCTGGGTATCTTGCTTCTTCTTTCACCTTTGAGCTGGTTAACAACCAGAACTATGATGGATGCAGAAGGAGGACTGTAACTGTCAAGGGTTCTGATCATGAGAGGAAGAAAGGGGTCCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTAAAGTATGGTAAAGGGGACTGGAGAAACATCTCTCGCAATTTTGTTGTCACAAAGACTGCAACACAAGTAGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGACCTAGCATCCATGATATAACCACTGTTAATCTTGCAGAAACTGCTGCACAAGATGAGAATAAGTCCCTATTGTTCAATATGTCTCCCATGCTTGCATCACAGCAGAAGCTGACTAGCATGTCAAAAGTACAACTGAGCCAGACTACTAGTCACTACAATGATGGATCACTCATGGTTTTTAACCCAAATTGTGATGACTTGATGATGTCATCTTCATATGATATCACTTCCAAGACTCTTAAACTGCAAGGGCAGGATCTCTATGACTGTGCTTTCCATGAGGCTTATGCCAAGCTAAAAATTCCAGGCTCCAGGATGGCTTCTAGAAACTTCAATAAGGAAGCTGATTTTGGTATTCATGCACTGTGA 924 0.4242 MDLETLYSPCFVSNSNWFVQESHHSTEWSREDNKKFESALAIYDKDTPDRWLKVAAMIPGKTVFDVIKQYRELEEDVSDIEAGRVPIPGYLASSFTFELVNNQNYDGCRRRTVTVKGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTATQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLAETAAQDENKSLLFNMSPMLASQQKLTSMSKVQLSQTTSHYNDGSLMVFNPNCDDLMMSSSYDITSKTLKLQGQDLYDCAFHEAYAKLKIPGSRMASRNFNKEADFGIHAL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00872 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 237 IPR043363 -
Rops9g00872 307 CDD SANT 127 171 IPR001005 -
Rops9g00872 307 ProSiteProfiles Myb-like domain profile. 120 172 IPR001005 -
Rops9g00872 307 Gene3D - 126 177 - -
Rops9g00872 307 SUPERFAMILY Homeodomain-like 122 176 IPR009057 -
Rops9g00872 307 ProSiteProfiles SANT domain profile. 128 176 IPR017884 -
Rops9g00872 307 SMART sant 124 174 IPR001005 -
Rops9g00872 307 SMART sant 24 76 IPR001005 -
Rops9g00872 307 Pfam Myb-like DNA-binding domain 127 171 IPR001005 -
Rops9g00872 307 Gene3D - 19 87 - -
Rops9g00872 307 SUPERFAMILY Homeodomain-like 26 80 IPR009057 -
Rops9g00872 307 FunFam transcription factor MYB1R1 126 177 - -
Rops9g00872 307 CDD SANT 27 73 IPR001005 -
Rops9g00872 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 176 IPR017930 -
Rops9g00872 307 FunFam Transcription factor SRM1 20 87 - -
Rops9g00872 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 123 175 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00872 Rops-Chr9 14229417 14231323 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops9g00872 Myb_DNA-binding 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00872 - - gmx:778039 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03994 11 74442205 74444201 Rops9g00872 9 14229417 14231323 ECH
Rops8g01879 8 42677013 42679108 Rops9g00872 9 14229417 14231323 ECH
Rops9g00872 9 14229417 14231323 Rops9g00872 9 14229417 14231323 ECH
Rops11g03994 11 74442205 74444201 Rops9g00872 9 14229417 14231323 PCT