Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00870 ATGAGTTTCTCGCCGTTGAATCGACGTCGGTACACCTTTCCAATTACTATTAAAGTACAAAATCAATCAACCCAGCGTTTGCCTTCATCTTTTGTGAAGTCATCACTCAATCTGAATCTGGAGCATGTTGTGCTGGAGATTGAAGGAGGTCGTAGCTGGAATTGTGGCCTGTATAGACCAAAATCAAGGCCCAATGAAGCTAGAATAAGTTCAGGATGGAAGATGTTTTGTGCTGACTTGCAGTTGAAGGCTGGGGACAAAATCATCTTCAAAGTGAAAGATAAATTCACAACCATCTATTTGTTGTCATTGACCGTCTGTAGGCATTTTGGTTATTGA 339 0.41 MSFSPLNRRRYTFPITIKVQNQSTQRLPSSFVKSSLNLNLEHVVLEIEGGRSWNCGLYRPKSRPNEARISSGWKMFCADLQLKAGDKIIFKVKDKFTTIYLLSLTVCRHFGY* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00870 112 CDD B3_DNA 19 91 IPR003340 GO:0003677
Rops9g00870 112 Gene3D - 7 107 IPR015300 -
Rops9g00870 112 Pfam B3 DNA binding domain 16 96 IPR003340 GO:0003677
Rops9g00870 112 SMART B3_2 12 105 IPR003340 GO:0003677
Rops9g00870 112 ProSiteProfiles B3 DNA-binding domain profile. 10 106 IPR003340 GO:0003677
Rops9g00870 112 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 9 96 IPR039218 -
Rops9g00870 112 SUPERFAMILY DNA-binding pseudobarrel domain 13 97 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00870 Rops-Chr9 14183609 14184556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00870 26 101 B3 DNA Binding Superfamily AT4G00260 36.842 3.57e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g00870 B3 9.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00870 - K05720 bna:106360567 49.6766