Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00862 ATGGAAGAGGGTATGTCAGGCTTTTGTATTAGTAGATCTGGAAGTGTCCGTGGTAAAAGTGGCAGCACTGGCACTAAGTGTGGGCGTTGGAATCCCACTACTGAACAGGTTAAACTTCTGACTGAACTCTTCAGGTCAGGGCTACGCACCCCAAGCACTGATCAGATTCAGAAGATCTCCAATCAGCTCAGCTTTTATGGTAAGATAGAGAGCAAAAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAGAAACGTCGTAAGGTCTCCTTTGATGATAAGGATGTGATTCTTAGAGACAACTCTTCTACACAAAGTATTGCTGAGATGTATCAAGTTTCAGAGCCTGATAGGGTGATTGAGACTCTTCAACTCTTCCCCTTGAACTCCTATGGTGAATCAGAATCAGAGAAGCTGAGGGTGCATGCAAATGAACGCCGGGATAATACATTGTTTACATACACAATGGGAGAACAAATGGAGCACCCACCATTAGACCTGCGCTTGAGCTTTCTTTGA 528 0.4394 MEEGMSGFCISRSGSVRGKSGSTGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDVILRDNSSTQSIAEMYQVSEPDRVIETLQLFPLNSYGESESEKLRVHANERRDNTLFTYTMGEQMEHPPLDLRLSFL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00862 175 CDD homeodomain 29 89 IPR001356 GO:0003677
Rops9g00862 175 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
Rops9g00862 175 FunFam WUSCHEL-related homeobox 11 26 94 - -
Rops9g00862 175 SUPERFAMILY Homeodomain-like 28 90 IPR009057 -
Rops9g00862 175 Gene3D - 26 94 - -
Rops9g00862 175 SMART HOX_1 25 92 IPR001356 GO:0003677
Rops9g00862 175 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 104 IPR044555 GO:0003700|GO:0099402
Rops9g00862 175 Pfam Homeodomain 27 87 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00862 Rops-Chr9 14079822 14080779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00862 13 175 Wox Gene Family AT3G11260 56.452 8.02e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops9g00862 Homeodomain 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00862 - - pvu:PHAVU_008G226100g 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00862 9 14079822 14080779 Rops9g00862 9 14079822 14080779 ECH