Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00854 ATGGCGGTGAAACCTACCAAGGCTGAGAAGAAGATCGCTTACGATGCTAAGCTGTGCCAACTCCTTGAGGACTACACCCAGATCCTGATTGTGAATGCCGACAACGTTGGATCTACCCAGCTCCAGAACATTCGTAAGGGTTTACGTGGCGACTCGATTGTGCTCATGGGAAAGAACACCATGATGAAGCGTTCTGTTAGGATTCATGCTGAGCAAACCGGCAACAATGTCTTCCTCAACCTTATCCCTCTTCTTGTCGGAAATGTTGGATTGATTTTCACTAAAGGTGACTTGAAGGAAGTTAGCGAAGAGGTTGCTAAATACAAGGTGGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTCGACCCCTCCCAGACCTCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTGATTAAGAAGGGAGAGAAGGTTGGCTCTTCTGAAGCTGCATTGCTTGCCAAGCTAGGCATTAGGCCCTTCTCATACGGGCTTGTGGTCCTTTCTGTTTATGATAATGGTTCGGTGTTTAGCCCTGAGGTTCTTGATCTTACTGAGGATGACCTTGTTGCAAAGTTTGCTGTTGGTCTCTCAATGGTTACTTCACTTTCATTGGCTGTCTCATACCCAACCCTTGCTGCGGCACCTCACATGTTTGTGAATGCCTATAAAAATGTCCTTGCTGTTGCTGTGGAGACGGATTATTCCTTCCCAGAGGCAGACAAGGTTAAGGATTACCTCAAGGATCCAAGTAAGTTTGCTGTAGCTGCTGTTGTACTTGCTGCTGATTCTGGTGCTGCCCCAGCTGCTGCCAAAGAAGAGGAAAAGAAGGATGAGCCGGCTGAAGAATCTGATGATGAGTTGGGTTTTGGTCTTTTTGATGACTAA 963 0.4714 MAVKPTKAEKKIAYDAKLCQLLEDYTQILIVNADNVGSTQLQNIRKGLRGDSIVLMGKNTMMKRSVRIHAEQTGNNVFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAVGLSMVTSLSLAVSYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKDYLKDPSKFAVAAVVLAADSGAAPAAAKEEEKKDEPAEESDDELGFGLFDD* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00854 320 Gene3D - 6 209 IPR043141 -
Rops9g00854 320 FunFam 60S acidic ribosomal protein P0 113 186 - -
Rops9g00854 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Rops9g00854 320 CDD Ribosomal_P0_L10e 9 185 - -
Rops9g00854 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Rops9g00854 320 MobiDBLite consensus disorder prediction 293 320 - -
Rops9g00854 320 PIRSF L10E 1 319 IPR030670 GO:0042254
Rops9g00854 320 Pfam Ribosomal protein L10 7 108 IPR001790 -
Rops9g00854 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 301 - -
Rops9g00854 320 Gene3D - 114 185 IPR043164 -
Rops9g00854 320 MobiDBLite consensus disorder prediction 304 320 - -
Rops9g00854 320 Pfam 60s Acidic ribosomal protein 234 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00854 Rops-Chr9 13931810 13934101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00854 1 318 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 81.132 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00854 K02941 - gmx:100777482 517.694