Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00852 ATGGCTTCCGCTTTCCGTGACCGCACGTCGGAGTTCCGATCGCTATCGGAGACTCTGAAGAAAATCGGTAAAAGCACTTCGCCGGAGAATCAACCGGAAAATGCTCCGTCGACGTCTCAAAAGTCTTATTCCAGATCCGAATTCAACCGGAAGGCCTCACGAATCGGGTTGGGGATCCACGAAACCTCACAGAAAATCGCGAGGCTCGTTCAATTGGCGAAGAAATCGTCGATGTTTAATGATCCGATTGTGGAAATACAAGAGCTAACTGCGTTGATTAAGACCGATATCACGACGTTGAATTCGGCTCTTTCGGATTTGCAAACGATTCAGAAAATGGAGATAGCTGATGGGAATTACTCTGAGGATACGATTGTGCATTCATCTACTGTTTGTGATGACTTGAAGAACAAGCTTATGGGAGCTACAAAACACCTTCAAGATGTCTTGACTACTAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATATTTTCCCAGAATGTATCAAGAGAGAACCCGTTCCAGCATCAGCCAAAGCCAGCTTCCGAGCCACCACCTTGGTCAAATTCAACAAATGCATCAGGGAGTGTGCAACAAACATCGGCATTACCATCAATTGGAGTTCCAGCTGGAAATCAACTAAGACGAAGGTTAGCTGTGGACAACACTGCATCCCAGCAAATGGAAATGTCTATGGTACAGCAGGAAGTTCCTCGGCATGAAAATTATGCTCAAAGTCGGGCAACTGCCCTGCACAATGTGGAATCTACTATCACAGAACTTAGTGGGATCTTCTCGAATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTAGCTATAAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCCTTATTGAGACATCTCAACCGAATATCATCAAATAGGTGGCTTCTAATCAAGATATTTGCCGTTCTGATATTTTTTCTGATGGTCTTCATATTCTTCGTGGCCTAA 1011 0.4461 MASAFRDRTSEFRSLSETLKKIGKSTSPENQPENAPSTSQKSYSRSEFNRKASRIGLGIHETSQKIARLVQLAKKSSMFNDPIVEIQELTALIKTDITTLNSALSDLQTIQKMEIADGNYSEDTIVHSSTVCDDLKNKLMGATKHLQDVLTTRTENIKAHENRKQIFSQNVSRENPFQHQPKPASEPPPWSNSTNASGSVQQTSALPSIGVPAGNQLRRRLAVDNTASQQMEMSMVQQEVPRHENYAQSRATALHNVESTITELSGIFSNLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFAVLIFFLMVFIFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00852 336 MobiDBLite consensus disorder prediction 1 47 - -
Rops9g00852 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Rops9g00852 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops9g00852 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 21 IPR021538 -
Rops9g00852 336 SMART tSNARE_6 239 306 IPR000727 -
Rops9g00852 336 MobiDBLite consensus disorder prediction 19 46 - -
Rops9g00852 336 CDD SNARE_syntaxin5 247 332 - -
Rops9g00852 336 PANTHER SYNTAXIN 46 329 IPR045242 -
Rops9g00852 336 MobiDBLite consensus disorder prediction 189 210 - -
Rops9g00852 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Rops9g00852 336 Pfam SNARE domain 281 332 IPR000727 -
Rops9g00852 336 MobiDBLite consensus disorder prediction 160 213 - -
Rops9g00852 336 Gene3D - 39 299 - -
Rops9g00852 336 MobiDBLite consensus disorder prediction 163 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00852 Rops-Chr9 13915723 13921116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00852 1 336 SNARE and Associated Proteins AT5G05760 66.766 8.17e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00852 K08490 - gmx:100777383 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00852 9 13915723 13921116 Rops9g00852 9 13915723 13921116 ECH