Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00827 ATGAGGGGGCTACCCGCTCCATCCATTACTCCCTCATCTTCTCTCGATCGAGGTCTTCTCGATTTTTTTCTCTACTCTACTATTTGTTGCAACAAAAAAGCTCATTCCTTTAACACTTCATCTCTACTAGTCAAGAGGATTTGGAGCATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCCTCAGACCACATCATGGAGAATAAGCTTCAGAAGGAGAATTACGATGGCCTGTATAACTCATCAATTTTGCTTGAATTGTCAGCATCTGATGATGTTGAAGCTTTCAAAAGAGAAGTAGATGAGAAGGGTTTGGATGTCAACGAGGCAGGCTTTTGGTATGGTAGAAGAATTGGATCAAAGAAGATGGGATCCGAAAAGAGGACCCCTCTCATGATTGCTTCTCTGTTTGGAAGCACTAGGGTGCTCAAGTATATTATTGAGACAGGAAGGGTTGATGTGAACAAGGCCTGTGGTTCTGATAAGGCCGCTGCTCTTCATTGTGCTGTTGCTGGGGGCTCTGAATTCTCACTTGAGATGGTCAAGCTATTGCTTGATGCTGGTACAGATGCTGAGTGCCTTGATGCTAGTGGAAATAAGCCGGTTAATCTGATCGCTCCTGCCTTCAATTCTTCATCCAAATCACGAAGGAAGGCCATGGAGTTATTTCTCAGAGGTGGGGAAAGAGATCAACTCATCCACCATGAGATGGAGATGTTCTCTGGTCCTCTCTCATCAAAAGAAGGTGGAGAGAAAAAAGAAAAGGAAGGAAGTGATAAGAAGGAATATCCTGTTGATATCTCGTTGCCTGACATAAACAACGGTGTATATGGAACTGATGAGTTTAGGATGTTTAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCATGACTGGACCGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCCTGCCCAGAGTTTCGCAAGGGGGCCTGCCAAAAGGGGGATTCTTGTGAGTATGCACATGGTGTTTTTGAGTCATGGCTACATCCTGCACAGTACCGAACAAGGCTTTGCAAGGATGAGACTGGCTGCTCTAGAAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGCTACGCCCGGTTTATGCTTCCACTGGGTCAGCCATGCCTTCACCAAAATCTTATTCAAGTAGTGGACTTGACATGACAGCAATGAGTCCATTGGCTCTTAGCTCCTCATCTTTACCTATGCCTACTGTTTCAACACCACCCATGTCTCCCTTGGCAGCTTCATCATCTCCAAAGAGTGGAAGCTTGTGGCAGAACAAAAATAACCTCACTCCACCATCTTTGCAGCTCTCGGGTAGCCGGTTGAAGACTGCTTTGAGTGCCAGGGATTTTGATCGGGAGATGGAACTTCTTGGTCTAGAAAGTCCTGCTCGTCAGCAGCAGCAGCACCAACAATTGATAGAAGAGATTGCCAGGATCTCTTCCCCATCCTTCCGGAGCAACGAATTCAGTAGGTTTGGTGATATAAATCCAACTAACCTTGATGACCTTCTAGGATCTGCTGATCCTTCTGTGTTATCTCAACTACATGGACTTTCTATGCAACCTTCAACACCTACACAGTTGCAATCTCAGATGCGACAAAACATGAACCACCTCAGGGCAAGTTATCCATCCAATATCCCTTCCTCTCCTGTGAGGAAACCTTCACCAGTTGGGTTTGATTCATCAGCTGCTGTGGCAGCTGCAGTGATGAATTCCAGGTCTGCTGCCTTTGCAAAGCGAAGCCACAGTTTCATTGATCGCAGTGCTGCAACCCACCATCTTGGGCTGTCTTTACCTTCCAACCCTTCCTGTAGGGTGTCCTCTGCCCTTTCAGATTGGAGTTCCCCCACTGGGAAACTGGATTGGGGTGTAAATGGAGATGAGCTGAACAAGCTGAGGAAATCCGCTTCTTTTGGGTTCAGAAACAATGGGGTTGCTGCAACTGCATCCCCTATGGCACAATCAGAACATGTTGAGCCTGATGTCTCTTGGGTTCATTCATTAGTTAAAGATGCACCCTCTGAGAGTTCTGAGATGTTTGGTGCTGAGAAGCAGCATCAGCAACAGTATGATCTCAGCAAAGAGATACTTCCACCATGGGTGGAGCAGCTGTATATAGAGCAGGAGCAGATGGTAGCATGA 2205 0.4621 MRGLPAPSITPSSSLDRGLLDFFLYSTICCNKKAHSFNTSSLLVKRIWSMCSGSKSKLSSSDHIMENKLQKENYDGLYNSSILLELSASDDVEAFKREVDEKGLDVNEAGFWYGRRIGSKKMGSEKRTPLMIASLFGSTRVLKYIIETGRVDVNKACGSDKAAALHCAVAGGSEFSLEMVKLLLDAGTDAECLDASGNKPVNLIAPAFNSSSKSRRKAMELFLRGGERDQLIHHEMEMFSGPLSSKEGGEKKEKEGSDKKEYPVDISLPDINNGVYGTDEFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSGLDMTAMSPLALSSSSLPMPTVSTPPMSPLAASSSPKSGSLWQNKNNLTPPSLQLSGSRLKTALSARDFDREMELLGLESPARQQQQHQQLIEEIARISSPSFRSNEFSRFGDINPTNLDDLLGSADPSVLSQLHGLSMQPSTPTQLQSQMRQNMNHLRASYPSNIPSSPVRKPSPVGFDSSAAVAAAVMNSRSAAFAKRSHSFIDRSAATHHLGLSLPSNPSCRVSSALSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVAATASPMAQSEHVEPDVSWVHSLVKDAPSESSEMFGAEKQHQQQYDLSKEILPPWVEQLYIEQEQMVA* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00827 734 MobiDBLite consensus disorder prediction 238 264 - -
Rops9g00827 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 325 345 IPR000571 GO:0046872
Rops9g00827 734 Gene3D - 78 224 IPR036770 -
Rops9g00827 734 MobiDBLite consensus disorder prediction 418 456 - -
Rops9g00827 734 SUPERFAMILY Ankyrin repeat 76 214 IPR036770 -
Rops9g00827 734 Gene3D - 321 383 - -
Rops9g00827 734 ProSiteProfiles Zinc finger C3H1-type profile. 320 347 IPR000571 GO:0046872
Rops9g00827 734 FunFam Zinc finger CCCH domain-containing protein 66 278 346 - -
Rops9g00827 734 Pfam Ankyrin repeats (3 copies) 121 191 IPR002110 GO:0005515
Rops9g00827 734 ProSiteProfiles Ankyrin repeat profile. 160 195 IPR002110 GO:0005515
Rops9g00827 734 SMART c3hfinal6 320 346 IPR000571 GO:0046872
Rops9g00827 734 SMART c3hfinal6 355 378 IPR000571 GO:0046872
Rops9g00827 734 PANTHER UNKEMPT FAMILY MEMBER 85 693 IPR045234 -
Rops9g00827 734 MobiDBLite consensus disorder prediction 246 264 - -
Rops9g00827 734 SMART ANK_2a 125 155 IPR002110 GO:0005515
Rops9g00827 734 SMART ANK_2a 160 192 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00827 Rops-Chr9 12816652 12825533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00827 81 729 C2H2 Transcription Factor Family AT5G12850 40.114 5.80e-144 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops9g00827 Ank_2 3.5e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00827 - - gmx:100783376 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00827 9 12816652 12825533 Rops9g00827 9 12816652 12825533 ECH