Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00822 ATGGTTTCTGTAACAATTATGGAAAATTACTATTATTCTGGCTGGCCTCTGAGTACCAATTGGGCTCAATGCAACTCTGCACCAAATAGTGATGATCACTATCCTTTTTCAGTCCCAACACAAACACTGCCTCTTCCCTCTGACTCTGCCTCTTTTCAATTTGGTGAGTTCCCTTCTTGGCCTGTACACATTGAAGGGGCTGCAGAACAAAGAGCTGCAAGTGCTTCTAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGAGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAATTGATTCCCAAGTCAGATAAGATGGACAAGGCAGCTCTACTAGGAAGTGTAGTAGACTATGTCAAAGATCTAAAGCGAAAAGCCATGGATGTCAGCAAAGTTAACACTGTTCCAACTGAAATTGATGAAGTGACAATTGACTATCACCAAGCTCAAGATGAAAGCTATACTATAAACAAGGTCAATGAAAACATCATTATCAAAGCTTCTGTTTGCTGTGACGATCGACCAGAACTGTTCCCGGAGATCATCCAAGTCCTCAAAGGATTGAAACTCACAGCAGTTAAAGCTGACATAACCACTGTGGGTGGCAGAATCAAAAGCATATTGGTGCTTTGCTCGAAGGATTGTGAAGAGGGTAGTGTTTGTCTTAGCACACTCAAACAATCCCTTAAATCAGCAGTGAACAAAATTGCTTCATTATCAGTGGCATCAAATTGCCCCACTAGAAGTAGGAGGCAGAGGTTCTTCTTGCCTTCTCATTGCTTACAATAA 792 0.4242 MVSVTIMENYYYSGWPLSTNWAQCNSAPNSDDHYPFSVPTQTLPLPSDSASFQFGEFPSWPVHIEGAAEQRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDYVKDLKRKAMDVSKVNTVPTEIDEVTIDYHQAQDESYTINKVNENIIIKASVCCDDRPELFPEIIQVLKGLKLTAVKADITTVGGRIKSILVLCSKDCEEGSVCLSTLKQSLKSAVNKIASLSVASNCPTRSRRQRFFLPSHCLQ* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00822 263 PANTHER TRANSCRIPTION FACTOR BHLH30 65 259 IPR045847 GO:0003700|GO:0006355
Rops9g00822 263 Pfam Helix-loop-helix DNA-binding domain 77 123 IPR011598 GO:0046983
Rops9g00822 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 127 IPR036638 GO:0046983
Rops9g00822 263 CDD bHLH_AtAIG1_like 69 146 - -
Rops9g00822 263 SMART finulus 80 129 IPR011598 GO:0046983
Rops9g00822 263 MobiDBLite consensus disorder prediction 68 88 - -
Rops9g00822 263 Gene3D - 68 132 IPR036638 GO:0046983
Rops9g00822 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Rops9g00822 263 CDD ACT_UUR-ACR-like 169 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00822 Rops-Chr9 12707732 12709074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00822 7 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.857 1.93e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g00822 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00822 - - gmx:100306102 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00822 9 12707732 12709074 Rops9g00822 9 12707732 12709074 ECH
Rops11g03941 11 73567906 73569713 Rops9g00822 9 12707732 12709074 PCT