Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00821 ATGATGGGTACCAGTACCAATTCCAATTCCAATGGTGGTTGTGATCGCGTGAAGGGTTCATGGAGTCCTCAAGAGGATGCTACGCTCTTGAAGTTAGTTAGCCAACACGGCGCACGCAACTGGTCCGTTATCAGTGCCGGAATCCCTGGCCGTTCCGGCAAGTCTTGCCGTCTCCGGTGGTGCAATCAGCTGAGTCCTGATGTGCAGCACCGTCCGTTCACCCCTGCCGAGGACAAGATCATAATCAAGGCCCACGCTATCCATGGAAACAAGTGGGCCACCATCTCACGCCTCCTCCCTGGTCGCACGGACAACGCCATAAAAAATCACTGGAACTCCACCCTCCGCCGCCGACGTATGGCGGAGCCGTCACTTTCCTCTGCTTTGTCGGAATCTCCAACGACCATGGCGAAGCGTCCTTCTGGCCCTTACGATGATCTCCTCCTTGATGCCTATGATGGTTTGTTGGATCGGCGTTACCCTTTCAAGAGGCCCTGCATTGAGAGTAACGGTTCCCGTGACAGCGATGAAGAAGAGGAAGAGGAAGAGGAAGAGGGATTGACGGGTCCTGTTACGACGTCGTTGAACCTGTTCCCGCTAGGAGAGAGCACAAAGAAGAAAGATGAAGAAGAGAGAAAAAAAGATGAAAAATTTGAAGCCAATGGGAAGATGATGGAAGGGAAGGACTACTTGAGGAGCACTATCCAGCGCATGATAGCAGAAGAGGTTAGGAGTTACTTTGAGAGTTTGCGCCATGGCGACCTTGCAACTGAGTTGCCCCCTCACATAAAAGAACATAAAAATCGATAA 810 0.5173 MMGTSTNSNSNGGCDRVKGSWSPQEDATLLKLVSQHGARNWSVISAGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDKIIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRMAEPSLSSALSESPTTMAKRPSGPYDDLLLDAYDGLLDRRYPFKRPCIESNGSRDSDEEEEEEEEEGLTGPVTTSLNLFPLGESTKKKDEEERKKDEKFEANGKMMEGKDYLRSTIQRMIAEEVRSYFESLRHGDLATELPPHIKEHKNR* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00821 269 MobiDBLite consensus disorder prediction 202 221 - -
Rops9g00821 269 MobiDBLite consensus disorder prediction 1 20 - -
Rops9g00821 269 MobiDBLite consensus disorder prediction 1 17 - -
Rops9g00821 269 Gene3D - 72 118 - -
Rops9g00821 269 CDD SANT 72 115 IPR001005 -
Rops9g00821 269 MobiDBLite consensus disorder prediction 173 187 - -
Rops9g00821 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 64 IPR017930 -
Rops9g00821 269 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Rops9g00821 269 SMART sant 17 66 IPR001005 -
Rops9g00821 269 SMART sant 69 117 IPR001005 -
Rops9g00821 269 MobiDBLite consensus disorder prediction 118 143 - -
Rops9g00821 269 FunFam Transcription factor MYB44 72 118 - -
Rops9g00821 269 ProSiteProfiles Myb-like domain profile. 18 64 IPR001005 -
Rops9g00821 269 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Rops9g00821 269 Pfam Myb-like DNA-binding domain 72 114 IPR001005 -
Rops9g00821 269 PANTHER MYB PROTEIN-RELATED 18 182 - -
Rops9g00821 269 FunFam MYB transcription factor 18 69 - -
Rops9g00821 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Rops9g00821 269 MobiDBLite consensus disorder prediction 166 221 - -
Rops9g00821 269 CDD SANT 20 62 IPR001005 -
Rops9g00821 269 Gene3D - 17 69 - -
Rops9g00821 269 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00821 Rops-Chr9 12696166 12697407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00821 15 122 MYB Transcription Factor Family AT4G37260 71.296 1.23e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g00821 Myb_DNA-binding 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00821 - - cam:101514420 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00821 9 12696166 12697407 Rops9g00821 9 12696166 12697407 ECH