Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00819 ATGTCGGACCAAAATTCTCGAGCATTCAATTGGCACTACGACACAGGGCTTGAAGACCAAAACTTCCAAATCCGTGGCCGGAAACTCTTCTTCATCATCGTCCTCTTCGCCATTATCCTCCTCTTCACCGCTCTCTCCCTCTGCGCTCGCTGGATCTGTCGCCGCCACAGCGGTCTTCTCCCAACGGCGTTGGGCTCCGTACGTCCGATCCACTCGCGGTTGTCAACTTCCACACCGTCACAGGGCCTCGACGCCGAAATGATCAAAAAGCTGCCGATAATTTTACACCAAGCGGCGTCAGATCCGAATCGGGCGTTGGAAGAAACTGAATGTTGCATCTGCTTAAGCGCGTTCAAAGATGGTGAGAAGTTGAAGGTTTTGCCTGGATGTGACCATTGCTTCCATTGCGAGTGTGTTGATGAGTGGCTTGTGAATCACTCAAGTTGCCCTCTCTGTAGAGCTTCTCTGAAATTCGATTTCTCATTCCCGAGGATTTTGATCCAAGAACCACCAATTAGACACGAACACGATCTCCGATTCTGA 543 0.5064 MSDQNSRAFNWHYDTGLEDQNFQIRGRKLFFIIVLFAIILLFTALSLCARWICRRHSGLLPTALGSVRPIHSRLSTSTPSQGLDAEMIKKLPIILHQAASDPNRALEETECCICLSAFKDGEKLKVLPGCDHCFHCECVDEWLVNHSSCPLCRASLKFDFSFPRILIQEPPIRHEHDLRF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00819 180 CDD RING-H2_EL5-like 110 153 - -
Rops9g00819 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 158 IPR013083 -
Rops9g00819 180 FunFam RING-H2 finger protein ATL66 75 158 - -
Rops9g00819 180 Pfam Ring finger domain 110 153 IPR001841 -
Rops9g00819 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 158 - -
Rops9g00819 180 SUPERFAMILY RING/U-box 102 162 - -
Rops9g00819 180 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Rops9g00819 180 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00819 Rops-Chr9 12666885 12667427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00819 2 161 C3H Transcription Factor Family AT3G11110 41.250 1.49e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00819 - - gmx:100794554 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03940 11 73557689 73558576 Rops9g00819 9 12666885 12667427 PCT