Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00818 ATGGACGACGAGTACTCTTCTTCCCCACCACAACAACAACCTCTCACTACTGATCATCACCCTCCCCAAGAAACCAAACCCACCGCCACCACCGTTGCTGCCACCACTCTTTGTGAAACATCTAACAGCAACAGCAACAGCAATAGCAGTAATAGCAGCACCTCCAATAACCGTAAATGCAAAGGTAAAGGTGGCCCTGATAATAACAAATTTAGATACCGTGGTGTGAGACAACGAAGTTGGGGTAAATGGGTCGCTGAGATCCGAGAACCACGTAAACGAACCCGTAAGTGGCTTGGTACCTTCGCCACTGCTGAAGACGCCGCCAGAGCTTATGACCGCGCCGCCATTATTCTCTACGGTTCTAGGGCTCAGTTAAACCTCCAACCCTCCGGTTCTTCTTCTCAATCTTCCTCTTCTCGTAACTCTTCATCTTCTTCTACTCAAACCCTTCGACCTTTACTTCCTCGTCCTTCAGGCTTTGGCTTCTCTTTTTCTTCCTCAGGTTCTCATCTTCCGGTTATGTTCAACGCTGCTTCCAATTTAGGTTTCGTGCCTTTGGGGGTTTACCCTAATAACAATAATTTCATCCCACCTGTGTTCTGCCCTGTGGATAATAACGTTGTGCAGCTTCATCAAAGTCACTGTAATAATCCTCAGGAAGTGGTGCAAGTACAACAGCAACAGTATCAAAATCTAGAATCTGATTTTAGTGTAACTGGTGGGGTTATTGCTCATGCGAATTCTATGAGATCAACCTCGTACCAGAACAGTTATCATCAGGATCAACATGTGCAACATTATCCTATGTCAAATCAACAGCAACATCATAATTGCATGGTGGAGGGAGTGAATTCCTTGGTGGGGTCAAGCTTGTCTTCTCAGAATATTAATATAGATGCACCGGTGGATCCTGATCCGTCGTTGGGGGTGGTGGCGACAATGGGTCTCGGTTCTCCAACTATATGGCCTTTGACAAATGAGGAAGATTACCCAGCTAGCCTTTGGGATTATAATGATCCTTTCTTCTTTGATTTTTAA 1041 0.4544 MDDEYSSSPPQQQPLTTDHHPPQETKPTATTVAATTLCETSNSNSNSNSSNSSTSNNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSGSSSQSSSSRNSSSSSTQTLRPLLPRPSGFGFSFSSSGSHLPVMFNAASNLGFVPLGVYPNNNNFIPPVFCPVDNNVVQLHQSHCNNPQEVVQVQQQQYQNLESDFSVTGGVIAHANSMRSTSYQNSYHQDQHVQHYPMSNQQQHHNCMVEGVNSLVGSSLSSQNINIDAPVDPDPSLGVVATMGLGSPTIWPLTNEEDYPASLWDYNDPFFFDF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00818 346 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 30 280 - -
Rops9g00818 346 SMART rav1_2 72 135 IPR001471 GO:0003700|GO:0006355
Rops9g00818 346 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Rops9g00818 346 SUPERFAMILY DNA-binding domain 72 129 IPR016177 GO:0003677
Rops9g00818 346 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Rops9g00818 346 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Rops9g00818 346 CDD AP2 72 129 IPR001471 GO:0003700|GO:0006355
Rops9g00818 346 FunFam Ethylene-responsive transcription factor 2 72 130 - -
Rops9g00818 346 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700|GO:0006355
Rops9g00818 346 MobiDBLite consensus disorder prediction 128 154 - -
Rops9g00818 346 MobiDBLite consensus disorder prediction 1 75 - -
Rops9g00818 346 MobiDBLite consensus disorder prediction 128 155 - -
Rops9g00818 346 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Rops9g00818 346 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00818 Rops-Chr9 12655561 12656601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00818 58 346 AP2-EREBP Transcription Factor Family AT2G40220 47.249 2.71e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops9g00818 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00818 K09286 - gmx:100301892 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00818 9 12655561 12656601 Rops9g00818 9 12655561 12656601 ECH