Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00814 ATGAAGGGTTATGAACCAAGGTCAAGCTCTTCTTGTGCAGCCTGCAAGTTCTTGAAAAGAAGATGCATACCCAATTGTATATTTGCACCTTACTTTCGTTCTGATGAGTGCAAGAAATTTGCCAAGGTCCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTTCCAGAGGAGCAGAGGGAAGACACGGTGAATTCACTGGCTTATGAGGCTGAAGCAAGGCTTAGAGACCCAGTTTATGGTTGCATAGGTGCCATAGCACTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGATCTTGCTATTGCTAAGGATCGTCTTGCTCGTTATGCTGCTGCTGCTGCTGCTACCACCACACCTTCTTCCACTGATATCTTGAATTCTCATGTTAGCTTGCCTCCTTTCCCTGAATTTTTAAGTTGCACTGATTTCAATGACAACTTTTGTCACAGCTCTTCATCTCAATCATTGAGCCGACATGAAACGGTGGATGATTTCATTCAAATCCCATATATATTTTGA 534 0.4345 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYAAAAAATTTPSSTDILNSHVSLPPFPEFLSCTDFNDNFCHSSSSQSLSRHETVDDFIQIPYIF* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00814 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Rops9g00814 177 Coils Coil 90 117 - -
Rops9g00814 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 145 - -
Rops9g00814 177 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00814 Rops-Chr9 12576286 12577017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00814 1 143 AS2 family AT3G11090 64.583 6.54e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops9g00814 LOB 6.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00814 - - gmx:100791250 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00814 9 12576286 12577017 Rops9g00814 9 12576286 12577017 ECH