Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00813 ATGAATGATGTTCTATCAGCAATGATGATCACCCCAGGTTTGTTACCAACTGGGTCTTTGCTAGATTCTTTGATTCACATATCCAATGAAGTTTGCTCAATGGAGAAGTTTCCCTTTGTTCACACAAGGAACGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACTGATACTCCACTCCCTCCTTCTTCAATCTTGTGCTTCACAGAGCTCTTCTCTGTGATCAAAAGAGTGAAGGTGTTGATCCAAGAATGCAAGGATGGAAGCTCTCTTTGGGGTCTCATACAGTTAGAGTTCATCTCCAACCAATTTTATGTGCTCATAAAGGAGATGGGAAGGGCCTTAGATATCCTTCCTCTTAGTTTGCTTAATATAACAGCAGATATAAGAGAGCAAGTGGAGCTTCTTCACAAACAGACAAAGAGGGCTGAGTTACTTATTGATCCTAGAGAGCTTCAAAGAAGAGAACAGCTTCTACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAACAAGGGGTTTGTTGATGTTGGAAAAGTGGAAGAGATATTAAGTAACATTGGTTTGAGAACTCCATCAGATTATGATGTTGGAATATCAAAGCTAGAGGCTGAAGCTCGGAATCAAGCAGGCACTGGAGGACTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTTGTTTCATATTCCAAATCCATGATATTCAGAAATGGAGAAAATGATAGAGTTGAAGAAGACTGTAAGCCACTATCCATATTTTTATACAACAAAATCTATGATAGTTCTTCATCTTCTCAATCCATGCCAGTGACACCTAATGTTCCTGATGAATTTCGTTGCCCAATTTCACTTGATTTGATGAGGGACCCTGTGATTGTATCATCCGGGCACACTTATGATCGAAATTCAATTGCACAATGGATAAACTCTGGGCATCACACTTGTCCCAAAAGTGGACAAAGGCTAATTCACACTGCTCTAATACCAAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCCATGAAAACAATGTCCCTGTTAATGAGCCTACTACTTCCCTTTCCGAGGGAAACAACAACAGCAAGAAGAACTTGAAGGAGAATGCTATTGATCATATTTCAGCAAACAAAGCAGCTTCAGATGCTTTCAAAATGACAGCAGAATTTCTAGTTGGAAAATTGGCAACTGGTTCAGCTGATATCCAAAGGCAAGCTGCATATGAACTTAGATTACTTGCAAAAACTGGCATGGATAACCGAAGAATCATAGCTGAGGTAGGTGCTATTCCATTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATACAAGAACATTGTGTGACAGCCTTGTTCAACCTCTCCATCTTTGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAACATAGTAAAAGTACTCGAATTAGGTAAAACCATGGTGGCAAGAGAAAATGCAGCAGCATTAATATTTAGCTTGTCTATGGTAGATGATTGCAAAGTACAAATAGGAGCACGACCAAGGGCAATACCTGCCTTAGTTGGACTCCTTAAAGAAGGTACCCCAATTGGGAAAAGAGATGCTGCTACTGCACTATTTCATCTTGCAGTTTATAATCCTAACAAAGCAAGCATTGTTAAAAGTGGGGCAGTTCCTTTGCTAGTTGAGTTGTTGATGGATGATAAGGCTGGCATAACAGATGATGCATTGGCTTTGCTTGCTTTGCTCTTAGGTTGCTCTCAGGGGCTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATAGATCTTTTGAGATTTGGGTCAGTGAAAGGGAAGGAGAATTCAATAACACTTTTACTAGGATTGTGCAAAGAAGAAGGGGAATTGGTGGCAAGGCGTCTCTTGGCAAATCCAAGGAGTATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGTTCTTTGAGGGCTAGGAGAAAAGCAGATGCATTGCTTCGGTTACTCAATAGGTGTTGCTCTCAACCTCATCATTCTATGTGA 2067 0.4006 MNDVLSAMMITPGLLPTGSLLDSLIHISNEVCSMEKFPFVHTRNVSSMIRRIKLLSSLFEEIQETDTPLPPSSILCFTELFSVIKRVKVLIQECKDGSSLWGLIQLEFISNQFYVLIKEMGRALDILPLSLLNITADIREQVELLHKQTKRAELLIDPRELQRREQLLQVMANNSLQNKKNKGFVDVGKVEEILSNIGLRTPSDYDVGISKLEAEARNQAGTGGLIVVSNINNLISLVSYSKSMIFRNGENDRVEEDCKPLSIFLYNKIYDSSSSSQSMPVTPNVPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHENNVPVNEPTTSLSEGNNNSKKNLKENAIDHISANKAASDAFKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRIIAEVGAIPFLVTLLGSQDSRIQEHCVTALFNLSIFDNNKILIMAAGAVDNIVKVLELGKTMVARENAAALIFSLSMVDDCKVQIGARPRAIPALVGLLKEGTPIGKRDAATALFHLAVYNPNKASIVKSGAVPLLVELLMDDKAGITDDALALLALLLGCSQGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSM* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00813 688 SMART arm_5 428 468 IPR000225 GO:0005515
Rops9g00813 688 SMART arm_5 553 593 IPR000225 GO:0005515
Rops9g00813 688 SMART arm_5 594 635 IPR000225 GO:0005515
Rops9g00813 688 SMART arm_5 514 552 IPR000225 GO:0005515
Rops9g00813 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 439 481 IPR000225 GO:0005515
Rops9g00813 688 SMART Ubox_2 288 351 IPR003613 GO:0004842|GO:0016567
Rops9g00813 688 Gene3D - 494 687 IPR011989 -
Rops9g00813 688 ProSiteProfiles U-box domain profile. 284 358 IPR003613 GO:0004842|GO:0016567
Rops9g00813 688 SUPERFAMILY ARM repeat 399 677 IPR016024 -
Rops9g00813 688 Gene3D - 366 493 IPR011989 -
Rops9g00813 688 FunFam RING-type E3 ubiquitin transferase 494 681 - -
Rops9g00813 688 Pfam U-box domain 285 355 IPR003613 GO:0004842|GO:0016567
Rops9g00813 688 CDD RING-Ubox_PUB 286 338 IPR045210 -
Rops9g00813 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 360 IPR013083 -
Rops9g00813 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Rops9g00813 688 PANTHER U BOX DOMAIN-CONTAINING 43 682 - -
Rops9g00813 688 Pfam Armadillo/beta-catenin-like repeat 430 467 IPR000225 GO:0005515
Rops9g00813 688 Pfam Armadillo/beta-catenin-like repeat 554 589 IPR000225 GO:0005515
Rops9g00813 688 SUPERFAMILY RING/U-box 275 359 - -
Rops9g00813 688 FunFam RING-type E3 ubiquitin transferase 284 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00813 Rops-Chr9 12562418 12564484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00813 18 683 U-box Gene Family AT3G46510 38.095 1.95e-129 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00813 - - gmx:100793498 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00813 9 12562418 12564484 Rops9g00813 9 12562418 12564484 ECH