Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00797 ATGGGTGGGAATTCCCCATGTGCCTCATGCAAACTGCTGAGACGCCGATGCACAAAAGATTGTACCTTTGCTCCTTATTTCCCTTCTGATGAACCCCAAAAGTTTGCCATAGTTCACAAGGTTTTTGGCGCAAGTAATGTTAGCAAAATGTTGCAGGAACTTCCGGTTCATCAAAGAGCAGATGCAGTGAGCAGTTTAGTGTATGAGGCAAATGCAAGAGTCCGGGATCCAGTTTATGGTTGTGTTGGAGCCATATCATATCTGCAAAACCAGGTTTCTGAGCTTCAAATGCAACTAGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGCAACCAGAGCCAGTGATTCTAAGCCCAGAAAATAACCCAGATCAGAAATCTTACTTTCTCCAAGACGACATCTCTCAGTACCTCAATTTTGCCTCTTCTAGCAATGTAATTCATGACTCTCTTAAGAGAGAGCATCTATGGACATGA 480 0.4375 MGGNSPCASCKLLRRRCTKDCTFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQPEPVILSPENNPDQKSYFLQDDISQYLNFASSSNVIHDSLKREHLWT* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00797 159 Coils Coil 85 105 - -
Rops9g00797 159 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Rops9g00797 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 126 - -
Rops9g00797 159 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00797 Rops-Chr9 12417316 12418135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00797 3 159 AS2 family AT2G30130 63.492 4.84e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops9g00797 LOB 6.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00797 - - lang:109360574 276.559