Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00790 ATGATGCACAAAAAAAGGCATCTGCATCAATTGAAGAGTCCATTCAATTCTTACCCCTTTGAAGCAGTTATCTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAAATAGAGTCGGGAACTATGACCGTCCATTTCATAGATAATCACCATATGACTATGGAGAAAGGCCCCTTGTCAGACATTCGAATAAGGTCAAGGAAAGCTACTTTATCAGATTGCTCCTGTTTTTTACGTCCTGGAATTGACATATGTGTGCTATCAGCCCCTCAACGTGCTGATGATTCAGTTGAATTTAGTCTGGAGCCTGTTTGGGCTGATGCCAGAATAAGTTCTATACAGAGAAAGCCCCATGAATCTGAGTGCAAGTGTCAATTTTATGTCAACTTCTATGTTAATCAAGGTTCACTTGGTGCAGAGCAAAGAAATCTTAATAAGGAGATTAAAGTTGTTGGAATCAATCAAATCTCCATCCTCCAAAGACTTGAACATAATCCTTGTGAAAATCAGTACTACCGCTGGACTTCATCTGAGGACTGCTCTGCATTACCACACACTAAATTGCTTTTGGGAAAAATTTTATGTGATATCTCATGGTTAGTTGTTGCATCTGTTTTAAAGAAGGTTACATTCTGTGCAAGATCTGTAGAAAACAAGCTTGTATATCAAATTCTGGCAAGTGATACTATTAGCACTTCGTTGAACACCATGTCTCGTATAAATGTTGTGAATTTCAGAGTAGACAATGACGTGTTAGTACCCATTGTTTCTCAAGTTGCTATGACTAACAACAGCAAGGCTGACCATACACATGAATCTCATGAAGATAAAGTGTCCCCATCTTATAATGTCGAAGGTCTAAGACGTTCCAAACGCCGACATGTACAACCTGAGCGTTACCTTGGTTGTGATGTTGTTCCTGAGTTTGATGTTGGTTCTTTTAGAAACAGACCACCAGTTAAAATAGTAGATATTTGGAAAGACGATGATGATGAAGAACTGTCGTTACCATTGGCATGCCTGTTTGGTTTGCAACGAAACTGTCCCGAGGAGGAGGATGCTGACAATCATCAAAAGGTCAACAAGGTGAATACCTGCCGACAGCTTCAAGTGTACAGTAAGAGAGCTAAAAAGTGGAAGGCAAAGTCTGGTGATGCTGATCAAAATGAACATCAAACTGAACTTGCTATTATTCCTCTTCCCGATCAAGGTGATCCAATAGCAGTTGAGCATTGTGATTTAAATGATAATGTTACTAGAAGTTATGAACATGAATCTGCTGAAATTTCTTCCAAATATTATCATCTGATTAATAGCCCTAAATCAAAGAGGAACAACATTCATTTGTTAACTTTTGAGCCGTACAATGTGCCTGCAAAGTCAGATGATGCAGAAATGAATGATGGTTTTCCTTCAAGATATCATTATAGTTATGGCACCCCTAAGTTACAGAGGAAGAGTTTATGTGATCGGGATGATATGGATATCGGAAATAGATGGGAACGGATAAACTCCAATAAAGGATCACAAGAGAGAAGATACCAGTCAACATATTCAAGAAGCAGAAATCGTGGTGAAGAAAGAACTTACAAAGACAGAACCTTGAATGCAGCTGCCTACAAGGAATTAATAAATTCATACCTAAAGAATATTGATACAAGACCAGACAAAGAAGAACAGCCTCTTACTGACCAGTGGAAGCAGTGTAAGACTACAAGCTTTGAGCAAAAGAGGGAAACAGATGTATCTCATGGAGAGGATGCGGAAGAAATGTCTGAATTGGATATGTTGTGGAGAGAAATGGAAGTGTCATTGGCATCGAGTTATTTTATGGAGGACACCGAGGGTTCAAATGCTGCCACTTTTGCCGAGACTGTAAAATCGAATGAAGTTTGTCAGCATGATTATAGGTTGGATGAAGAAATTGGAATATACTGCTTAAGATGTGGCTTCGTGAAAACTGAGATCAAAGATGTTACACCACCTTTTTTTCAACATTCAGTGTGGCACCAAGAAGAGAAGCAGTGTGCTGGAGAAGATTCAGAGCCTAAGGCTGATGAAGATGATGATGTCCATCCTTTCTCAACTGTTGCTTCTCCTGACGAACCTATATCTGATGAAAATGATAATGTTTGGGCCTTAATTCCCGAACTCAGAAAAAAATTGCACGTCCATCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAATATTGCAGGGTCTACAAATCCAGGACTCATGGAAGCAGAATCCAAAAAAATGGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATTATTGCTTTTCTGGTTAGCTACTTAAAGTTATTCCCAGGGAAGAGACCACTAGTCCTTGCTCCAAAAACAACACTTTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCAGTATATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATGATGGTTTTTCCTGGAGTTCCCAAGCCCACTGAGGATGTCAAGCACGTTTTGGATTGCTTGGAGAAGATACAAAAATGGCATTCACAACCGAGTGTCCTAATCATGGGTTATACTTCTTTTTTAACATTGATGCGAGAGGATTCAAAGTATGCACACAGAAGGTTTATGGCTAAAGTATTGAGGGAAAGTCCTGGGCTCCTGGTACTGGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGTTTTGATGAAAGTACAGACAGAATTGAGAGTACTACTTTCAGGTACTTTGTTTCAGAACAATTTCTGTGAGTACTTTAACACTCTCTGCTTGGCAAGACCAACATTTGCTCATGAAGTACTGAAAGCATTAGACCCGAAATACAGGAGAAAAAGGAAAGGAGCAGAAAAAGCACATTTAATAGAGTCACGGGCTAGAAAATTATTCTTAGATAAAATTGCTAAGAAAATTGACTCAAATGTTGGTGAGGAGAGGATGCAAGGTCTAAACATGTTGAGAAATGTGACAAATGGTTTTATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTTCCTGGTTTACAAATTTATACATTGCTAATGAATACAACTGATATGCAGCATGAGATTTTGCAGAAACTGCACAAGAAAATGGCTAAGTGCAATGGATACCCTCTGGAATTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTGGTCAAATCAGCTGTATGTGCTGAAAAGTTTTTCACTCAGGAGGAATTGAGGGAGCTAGACAAATGCAAGTTTGATTTAAAAATAGGGTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGCGTGGTCAAGAAGGAGAAGGTTCTTATCTTTTGCCACAACATTGCACCTGTCAGATTGTTTCAAGAATATTTTGAGAAGTACTTTGGATGGCAAAAAGGCCGGGAAGTTTTGGTACTAACTGGGGAACTAGAGCTCTTCGAACGGGGGAGAGTAATGGATAAGTTTGAGGAGCCTGGTGGAGTATCAAAGATACTTCTTGCTTCAATCACAGCTTGTGCTGAAGGCATTAGTTTGACTGCAGCTTCTCGTGTGATTTTGTTGGATTCAGAATGGAATCCATCAAAAACAAAGCAGGCTATTGCTCGGGCCTTTCGTCCTGGTCAGCAAAAAGTGGTTTATGTGTATCAGCTTTTGATAACAGGTTCATTGGAGGAGGATAAGTACCGAAGAACCACTTGGAAAGAATGGGTATCAAACATGATTTTTAGTGAGGCCTTTGTGGAGGACCCTTCTCGATGGCAAGCTGAGAAGATTGAAGATGACATACTAAGGGAAATGGTTGAAGAGGACCGGTCTAAATCATTCCATATGATAATGAAGAATGAAAAAGCTTCAACTAATAACAGATGA 3909 0.3937 MMHKKRHLHQLKSPFNSYPFEAVIFGSWQAVEFIKIESGTMTVHFIDNHHMTMEKGPLSDIRIRSRKATLSDCSCFLRPGIDICVLSAPQRADDSVEFSLEPVWADARISSIQRKPHESECKCQFYVNFYVNQGSLGAEQRNLNKEIKVVGINQISILQRLEHNPCENQYYRWTSSEDCSALPHTKLLLGKILCDISWLVVASVLKKVTFCARSVENKLVYQILASDTISTSLNTMSRINVVNFRVDNDVLVPIVSQVAMTNNSKADHTHESHEDKVSPSYNVEGLRRSKRRHVQPERYLGCDVVPEFDVGSFRNRPPVKIVDIWKDDDDEELSLPLACLFGLQRNCPEEEDADNHQKVNKVNTCRQLQVYSKRAKKWKAKSGDADQNEHQTELAIIPLPDQGDPIAVEHCDLNDNVTRSYEHESAEISSKYYHLINSPKSKRNNIHLLTFEPYNVPAKSDDAEMNDGFPSRYHYSYGTPKLQRKSLCDRDDMDIGNRWERINSNKGSQERRYQSTYSRSRNRGEERTYKDRTLNAAAYKELINSYLKNIDTRPDKEEQPLTDQWKQCKTTSFEQKRETDVSHGEDAEEMSELDMLWREMEVSLASSYFMEDTEGSNAATFAETVKSNEVCQHDYRLDEEIGIYCLRCGFVKTEIKDVTPPFFQHSVWHQEEKQCAGEDSEPKADEDDDVHPFSTVASPDEPISDENDNVWALIPELRKKLHVHQKKAFEFLWQNIAGSTNPGLMEAESKKMGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQKSMMVFPGVPKPTEDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKYAHRRFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRVLLSGTLFQNNFCEYFNTLCLARPTFAHEVLKALDPKYRRKRKGAEKAHLIESRARKLFLDKIAKKIDSNVGEERMQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDMQHEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKSAVCAEKFFTQEELRELDKCKFDLKIGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLITGSLEEDKYRRTTWKEWVSNMIFSEAFVEDPSRWQAEKIEDDILREMVEEDRSKSFHMIMKNEKASTNNR* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00790 1302 Pfam SNF2-related domain 718 978 IPR000330 GO:0005524|GO:0140658
Rops9g00790 1302 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1299 IPR044567 GO:0080188
Rops9g00790 1302 MobiDBLite consensus disorder prediction 499 527 - -
Rops9g00790 1302 MobiDBLite consensus disorder prediction 670 699 - -
Rops9g00790 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1020 1284 IPR027417 -
Rops9g00790 1302 Gene3D - 697 988 IPR038718 -
Rops9g00790 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 949 IPR027417 -
Rops9g00790 1302 SMART ultradead3 717 961 IPR014001 -
Rops9g00790 1302 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1267 IPR001650 -
Rops9g00790 1302 Pfam Helicase conserved C-terminal domain 1103 1219 IPR001650 -
Rops9g00790 1302 SMART helicmild6 1131 1220 IPR001650 -
Rops9g00790 1302 CDD SF2_C_SNF 1095 1231 - -
Rops9g00790 1302 CDD DEXHc_ATRX-like 721 947 - -
Rops9g00790 1302 MobiDBLite consensus disorder prediction 671 694 - -
Rops9g00790 1302 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 746 946 IPR014001 -
Rops9g00790 1302 Gene3D - 1023 1302 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00790 Rops-Chr9 12318245 12326230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00790 1099 1238 RAD5 or RAD16-like Gene Family AT5G43530 32.867 3.88e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops9g00790 SNF2_N 4.4e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00790 K10875 - gmx:100811703 2019.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00790 9 12318245 12326230 Rops9g00790 9 12318245 12326230 ECH
Rops11g03915 11 73239554 73244205 Rops9g00790 9 12318245 12326230 PCT