Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00789 ATGGGTGCTTATGATCAAGGTTCTAATAGATCTCATCAGCCTTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGGTCTAGATCCGTGGCTGAAACTCTGGCGAAGTGGAAGGAATACAATGAGCATCTTTATTCCGGCAAAGATGATGGTAAATCAACTGGTAAAGCCCCAGCTAAAGGTTCAAAGAAAGGGTGCATGAAAGGTAAAGGAGGACCTCAAAACTCACAGTGTAACTATAGAGGTGTCAGGCAGAGGACATGGGGAAAATGGGTTGGTGAGATTCGAGAGCCAAATAGAGGAAGTAGGCTTTGGTTGGGTACTTTCTCTACTGCACAAGAAGCTGCTCTTGCTTATGATGAAGCTGCTAGGGCCATGTATGGTCCTTGTGCACGACTCAACTTCCCTCACATCTCAGATTATAGTTCCATCAAAGAATCATTGAAGGAATCTTCGTTGGCTTCTGCAACATGTTCTAGTTCTTCTGTGGCAACTCCAGCAACCTCGGACACTACTACTATATCCAATCATTCAGAGGTTTGTGCAGCTGAGGATGTTAAGAAGAAACCTAAACCGGTCAATATGAACAATAAGGTTAATGCTTGTCATAGAGATTATGAATCTGCCTCTCCAACTAGCAAAATGAAGCAAGAACCAAAGGATGAGGCTGCGGATCTCACAGACCCTGGAGGTGGGGAAATCCAAGATGTCAAACAAGGAGGAACACATGATGTTGGGCAGAGCACCGAGGATGACAATAAAGATCTGATGAATTTTTCATGGATTGATGGCTTTGATTTTAATGGAGATTACTTGAAGAGCTTTTCCATGGATGAATTATTTCAAGTGGATGAACTTTTGGGGCATATAGACAGTAATCCAATTGATAATAACTCTGGATTGATGCAAGATTTGGATATTGGGCAAATGGATTTCCTAGACAGTAATCCTCAGGTTGAGACACCTTCGAGTTATATTTATCAACTGCCAAACCCAGACGCCAAGTTGCTGGGAAGTTTACCTGATATGGAACAAACACCATCAGGTTTTGATTATGGATTAGATTTCTTGAAAACAGAAGAACCAGGGGACTATAATGATGGAGGGGAAGAGTCACGGTTTCTTGATTTGGATAATGATCTGAACCATGATTCAAAGGGAATGTAA 1176 0.4209 MGAYDQGSNRSHQPLDSSRKRKSRSRGDGSRSVAETLAKWKEYNEHLYSGKDDGKSTGKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYSSIKESLKESSLASATCSSSSVATPATSDTTTISNHSEVCAAEDVKKKPKPVNMNNKVNACHRDYESASPTSKMKQEPKDEAADLTDPGGGEIQDVKQGGTHDVGQSTEDDNKDLMNFSWIDGFDFNGDYLKSFSMDELFQVDELLGHIDSNPIDNNSGLMQDLDIGQMDFLDSNPQVETPSSYIYQLPNPDAKLLGSLPDMEQTPSGFDYGLDFLKTEEPGDYNDGGEESRFLDLDNDLNHDSKGM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00789 391 MobiDBLite consensus disorder prediction 209 254 - -
Rops9g00789 391 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Rops9g00789 391 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 353 - -
Rops9g00789 391 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Rops9g00789 391 MobiDBLite consensus disorder prediction 212 230 - -
Rops9g00789 391 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Rops9g00789 391 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Rops9g00789 391 MobiDBLite consensus disorder prediction 354 391 - -
Rops9g00789 391 MobiDBLite consensus disorder prediction 360 391 - -
Rops9g00789 391 MobiDBLite consensus disorder prediction 48 82 - -
Rops9g00789 391 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Rops9g00789 391 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Rops9g00789 391 MobiDBLite consensus disorder prediction 1 33 - -
Rops9g00789 391 FunFam Ethylene-responsive transcription factor 2 81 140 - -
Rops9g00789 391 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Rops9g00789 391 Coils Coil 391 391 - -
Rops9g00789 391 Gene3D AP2/ERF domain 82 141 IPR036955 GO:0003700|GO:0006355
Rops9g00789 391 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00789 Rops-Chr9 12305694 12307809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00789 8 381 AP2-EREBP Transcription Factor Family AT2G40340 39.211 5.20e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops9g00789 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00789 - K09286 gmx:100800134 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00789 9 12305694 12307809 Rops9g00789 9 12305694 12307809 ECH