Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00717 ATGGAAAACTCAGACCACGACGAACCAGAGAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCCCGCTTGGCCACCAACAAGAAAACCGCTGATGCAAGTGTCTTACAGTTCCAAAATCAGCAGCTTGTTCAACAGATAGACAGCCAAAAACATGCTTTGCAGCATCTCGAAGATAAAATTAGAGAATTGAAAGAAAGGCAAAATTCTTATGATGACTTGTTAATTGCATTGAACCAACTATGGATTCAGTTGGTTGATGATATGGTTCTTCTCGGGATACGAGCGGGGAGAGGAAAAGACACATTGCAAACTTTGACTTACCTTGATAATCCTCAAGGTTCACTTCCTTTGTGTCCTGCTGAGGATGTATTTCTATGTAGATTAATCCAAAAAGATTCTATTGAAGGAAGCAGCAATGATGAGATAATTAATTATGTTGAGGAAGCCCTTGCCTTGCGTCGTTCATCTACGTGGGAGTTGTTGAAACTCCTTCAAAATACCATTGATGATCAGATGGAAAGAATAGACAGTATAATTCAGGTTTTTCATGGAGATTTATCTTCAGAAGATGCTATCATCCAAATGTCTAAGATTGATGATATGACAAAAGAGGAAGCAAATAGTTTACGTGAAGTGATGGATACTCTCCATGCAAAACATATAGAGTACACTGCAAGTATTCAAAATTATATTAACGAGTGCATGCAAGATCAATCTGACATAAAACACCTTGCAGGTGAGCTTGATGAGCTCGTGGCTGAACTTGAAGAAAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAGGAGGCAGTGATAGGGATGAATTCCCCCAATGCAGATGCAGTAAATGGAAACTTGTCTCCTGAAAAGCCTGCAGACAGGACCATGGGTTTGCATGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACAGGAAGACAATCAAACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAATGATGATAAGTATGTACGCTCTTCCCGGATATATTCTTTGGCAAATGATCAACTTCAACATTGGATGACTGAATTGGACCGATATAAAATGTTAACAGAGTCTCTGCAGGCTGGCAGCGTTCATGTCACAAAATGGGAGAAGGAACTGAATTTGAAATTGGAGTCTGCTGATGCTGCAAGGCATGTCCTTGACAATTCTGACTATAGGACTGATGAGCTAGAACTTCAGTTGCAGAAGTGTATCATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTATACAGGATACCGGCAGAAAAGATATCAAATCTGAGTTTCGTGTGATGGCTTCAGCATTATCTAAAGAAATGGGGATGATGGAAGCTCAGTTGAAGCGATGGAAGGATACTGCTCATGAGGCTGTATCCTTACGTGAGAAAGCACATTCACTAAGAGCATTGTTGAACGGGAAGACTACAGAACTTAAGAGCCTTGCAAGCAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTGAAAACATTGATTGAAAAGTTACAGAAGGAGAATCAGGAGTTAGAATTTGTTCTGGATATGCATGGCCAGGAGAATTATGATAAAAGATTAGCAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCTCAAGCTGAAATGCTAAAAAATGCTTTAGATGAACATAGTCTAGAGTTGAGAGTAAAAGCGGCTAACGAAGCTGAAGCTGCTTGTAAACAAAGGCTTTCTGCTGCAGAAGCTGAAATAGAGGACTTAAGGGCCAAGCTGGATGCATCCGAGAGAGATATCTTGGAGCTGACTGAAGCTGTGAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAGCATCTGTTGCAGCAGGTGACTGACAGGAATGACTATAATTTTAAGCTTGTAGCAGAAAGTGTGAAGACGAAACAGGCACATGGCACTTTATTGGCTGAGAAGCAGGCCTTAGCGAAGCAACTTCAACAAATTAATTCTTCAATAGAAAGTACAAAGGCGAGGATTACACGCAGTGAACAGCAGCAGATGAAAGGTATTCTAACGGAAGCCATTAAATTTACTCAAGATGAAAAACACCTTGCACTCTCCTTGGAATTTACAAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTGCTGCTTCATCTTCAGAGAAAGAATACGATCAAGTTCAGAAAGATATTGAAGTTGTTGAAATGGAATTGGATAGTGAAAGGAATTCGAGGAAGAAGCTTGAGGAAGAGCTAAGGGAATTGAACAACCAAATCGCTGAGCTTAGTTCTGAAACTGGAGAAACTGCAGTACAAAAACTAGAAGAAGAAATAAGGGTCTGCAAGAACATGATCAAGTGTACTGTATGTTCTGATCGTCCTAAGGAGGTGGTGATTGTGAAGTGCTATCATCTTTTCTGCAATCCTTGCATACAAAGAAATCTAGAGCTGCGTCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATATGA 2622 0.4024 MENSDHDEPEKKRPHLTSVSSRLATNKKTADASVLQFQNQQLVQQIDSQKHALQHLEDKIRELKERQNSYDDLLIALNQLWIQLVDDMVLLGIRAGRGKDTLQTLTYLDNPQGSLPLCPAEDVFLCRLIQKDSIEGSSNDEIINYVEEALALRRSSTWELLKLLQNTIDDQMERIDSIIQVFHGDLSSEDAIIQMSKIDDMTKEEANSLREVMDTLHAKHIEYTASIQNYINECMQDQSDIKHLAGELDELVAELEESRRKLVSLKMQKEAVIGMNSPNADAVNGNLSPEKPADRTMGLHELKDSIEEAKIVDADRLSELQDAQEDNQTLTKQFQDLQNELNDDKYVRSSRIYSLANDQLQHWMTELDRYKMLTESLQAGSVHVTKWEKELNLKLESADAARHVLDNSDYRTDELELQLQKCIIEKNDLEIKMEEAIQDTGRKDIKSEFRVMASALSKEMGMMEAQLKRWKDTAHEAVSLREKAHSLRALLNGKTTELKSLASKCAEQVLEIKSLKTLIEKLQKENQELEFVLDMHGQENYDKRLAEVRESESKARSQAEMLKNALDEHSLELRVKAANEAEAACKQRLSAAEAEIEDLRAKLDASERDILELTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQHLLQQVTDRNDYNFKLVAESVKTKQAHGTLLAEKQALAKQLQQINSSIESTKARITRSEQQQMKGILTEAIKFTQDEKHLALSLEFTKWELADAEKELKLLKSAASSSEKEYDQVQKDIEVVEMELDSERNSRKKLEEELRELNNQIAELSSETGETAVQKLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00717 873 Coils Coil 241 268 - -
Rops9g00717 873 MobiDBLite consensus disorder prediction 1 17 - -
Rops9g00717 873 ProSiteProfiles Zinc finger RING-type profile. 821 859 IPR001841 -
Rops9g00717 873 PANTHER RING FINGER PROTEIN-RELATED 8 873 IPR013956 GO:0004842|GO:0010390
Rops9g00717 873 Coils Coil 575 616 - -
Rops9g00717 873 Coils Coil 505 539 - -
Rops9g00717 873 Coils Coil 39 73 - -
Rops9g00717 873 Pfam Zinc finger, C3HC4 type (RING finger) 820 862 - -
Rops9g00717 873 ProSitePatterns Zinc finger RING-type signature. 836 845 IPR017907 -
Rops9g00717 873 CDD RING-HC_Bre1-like 813 869 - -
Rops9g00717 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 802 872 IPR013083 -
Rops9g00717 873 Coils Coil 680 707 - -
Rops9g00717 873 Coils Coil 412 439 - -
Rops9g00717 873 Coils Coil 320 340 - -
Rops9g00717 873 SMART ring_2 821 859 IPR001841 -
Rops9g00717 873 Coils Coil 730 802 - -
Rops9g00717 873 MobiDBLite consensus disorder prediction 1 23 - -
Rops9g00717 873 SUPERFAMILY RING/U-box 820 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00717 Rops-Chr9 10594538 10606251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00717 794 868 RAD5 or RAD16-like Gene Family AT5G05130 27.381 2.55e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00717 K10696 - gmx:100796610 1355.89