Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00716 ATGCGTCGTTGTAGAGCCACAGATCCAACGGAACGCGACGAAGCTATCAGAAGCCCGTCGAAGGAAACGCGATTCCGCGGAGTTAGAAAGCGTCCATGGGGTCGATTCGCCGCCGAGATCCGAGATCCATGGAAAAAAGCCCGTGTCTGGCTTGGTACCTTCGATTCCGCCGAGGACGCGGCCCGGGCTTACGATGCCGCGGCCCGTTCCTTCCGTGGGCCCAAAGCTAAAACCAATTTCCCTAACCTAAACCCAGAACTCGACATCTCTCACTCTCAGATCCCCCTCTATCATCAAGACCATGGGTTTTCTAAGTTCGACCCGGTTCGGCCCACCACTAGCGGCATGAGTAGCACCGTTGAGTCCTTTAGTGGGCCTAGGGTTCCGTCTTGCTCCGTCACCCGGGCCCATCACCCTCGCAGGCCTGTTAACCCTCCTCCTCCTCTCGATGATTGTCACAGCGATTGCGATTCCTCTTCATCCGTCATCGACGATGATCAAGATTGCGTTCTCACCTCTTCGTTTCGCAAACCCTTACCTTTCGATCTCAACCTCCCTCCGCCGGCCGGCGACGACTTCGATTTCACCGCCGATGAGCTTCGAGCCACCGCCTTGTGCCTTTGA 624 0.5689 MRRCRATDPTERDEAIRSPSKETRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPNLNPELDISHSQIPLYHQDHGFSKFDPVRPTTSGMSSTVESFSGPRVPSCSVTRAHHPRRPVNPPPPLDDCHSDCDSSSSVIDDDQDCVLTSSFRKPLPFDLNLPPPAGDDFDFTADELRATALCL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00716 207 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Rops9g00716 207 FunFam Ethylene-responsive transcription factor 2 16 82 - -
Rops9g00716 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 168 - -
Rops9g00716 207 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Rops9g00716 207 MobiDBLite consensus disorder prediction 131 159 - -
Rops9g00716 207 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Rops9g00716 207 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Rops9g00716 207 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Rops9g00716 207 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Rops9g00716 207 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Rops9g00716 207 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Rops9g00716 207 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00716 Rops-Chr9 10589428 10589706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00716 15 207 AP2-EREBP Transcription Factor Family AT1G50640 48.611 2.92e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g00716 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00716 K09286 - gmx:100795557 215.698