Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00714 ATGCCAGAAAACAGGCAGGTTCTGAAGAATGCTGCTTCTAATTCATCTGGTGACAACATTGAAGAAGCAATTCGACGTTTGAAAATCAATGATAATAGGGACAGAGATGCTGTAGCTCAATCTACCCCATATCCAGATCGACCTGGTGAACCTGATTGCTTATATTACTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTATAATCACCCTGCTCATGTTTCATTTGCTACTCAATATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACCGGCGAGGTGCTGCTCCTGTATTATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGCCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTTGCATGCAAGTTTAATCATCCACAACATGCTTCTTTTGGAGCTTACCCAATGGCTGGATCTCCTACCTCAACAGTGATTCCTGCATCTGGTTTACCATATGTTGGTGGGTTTCCTGCATGGTCAGTACCAAGAATGTCATATTTATCTGGGCAGGGAATTCAATCATATGTGCCTCCTTTTCTGTCTTCTTCACAAGGCATTATACCTGCGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCTGCAATGCCTACCGGTTTTCTTGGACCTAATCTTGTCTATGACTTCATGAATCCAAGTGAGTCACTTTCTGGTGGGCAGGTAATAAGTTCAACTCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAACACCGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAAGAAAGAATAGCCCAATCATCAACAAATACACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAAAATCTATGGAATATGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCTATCCCTCAGAACTATGGCTTGACCTTGCCTGCTCTATCTCTACTTGATTCATCTCTCATTAATAATCCAAGAGGGTCATCAACTGTCCAAGTCCAACCACCTGACACATCTCCATCTAAATTATCAAGTGAGAAACTTCAGTCCTCTGATACAAAAGCTGCTACAGAAGATTCATCCAAACAAGCTGATACTACATCAAATTCCTTACCAGCCTCCTCAGAGTCTTTACATGAATAA 1263 0.4228 MPENRQVLKNAASNSSGDNIEEAIRRLKINDNRDRDAVAQSTPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPAHVSFATQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVLFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFNHPQHASFGAYPMAGSPTSTVIPASGLPYVGGFPAWSVPRMSYLSGQGIQSYVPPFLSSSQGIIPAQSWNNYMGSMNPAMPTGFLGPNLVYDFMNPSESLSGGQVISSTLPDRPDQPECRYFMNTGTCKYGSDCKFHHPKERIAQSSTNTLGLPVRPGQAVCSYYKIYGICKFGPTCKFDHPVLAIPQNYGLTLPALSLLDSSLINNPRGSSTVQVQPPDTSPSKLSSEKLQSSDTKAATEDSSKQADTTSNSLPASSESLHE* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00714 420 Gene3D - 120 169 - -
Rops9g00714 420 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Rops9g00714 420 MobiDBLite consensus disorder prediction 1 20 - -
Rops9g00714 420 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Rops9g00714 420 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Rops9g00714 420 Gene3D - 46 119 - -
Rops9g00714 420 Gene3D - 266 347 - -
Rops9g00714 420 SUPERFAMILY CCCH zinc finger 313 339 IPR036855 GO:0046872
Rops9g00714 420 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Rops9g00714 420 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Rops9g00714 420 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Rops9g00714 420 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Rops9g00714 420 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Rops9g00714 420 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Rops9g00714 420 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Rops9g00714 420 MobiDBLite consensus disorder prediction 366 420 - -
Rops9g00714 420 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Rops9g00714 420 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Rops9g00714 420 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Rops9g00714 420 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Rops9g00714 420 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Rops9g00714 420 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Rops9g00714 420 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Rops9g00714 420 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Rops9g00714 420 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Rops9g00714 420 PANTHER PROTEIN PHOSPHATASE RELATED 22 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00714 Rops-Chr9 10571059 10575398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00714 1 401 C3H Transcription Factor Family AT1G04990 46.523 5.13e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops9g00714 zf-CCCH 2.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00714 - - vra:106765262 750.355