Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops9g00714 | ATGCCAGAAAACAGGCAGGTTCTGAAGAATGCTGCTTCTAATTCATCTGGTGACAACATTGAAGAAGCAATTCGACGTTTGAAAATCAATGATAATAGGGACAGAGATGCTGTAGCTCAATCTACCCCATATCCAGATCGACCTGGTGAACCTGATTGCTTATATTACTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTATAATCACCCTGCTCATGTTTCATTTGCTACTCAATATGGTGAAGAACTCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACCGGCGAGGTGCTGCTCCTGTATTATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGCCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTTGCATGCAAGTTTAATCATCCACAACATGCTTCTTTTGGAGCTTACCCAATGGCTGGATCTCCTACCTCAACAGTGATTCCTGCATCTGGTTTACCATATGTTGGTGGGTTTCCTGCATGGTCAGTACCAAGAATGTCATATTTATCTGGGCAGGGAATTCAATCATATGTGCCTCCTTTTCTGTCTTCTTCACAAGGCATTATACCTGCGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCTGCAATGCCTACCGGTTTTCTTGGACCTAATCTTGTCTATGACTTCATGAATCCAAGTGAGTCACTTTCTGGTGGGCAGGTAATAAGTTCAACTCTCCCAGATAGACCTGATCAACCAGAATGTAGATACTTTATGAACACCGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCACCCAAAAGAAAGAATAGCCCAATCATCAACAAATACACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAAAATCTATGGAATATGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCTATCCCTCAGAACTATGGCTTGACCTTGCCTGCTCTATCTCTACTTGATTCATCTCTCATTAATAATCCAAGAGGGTCATCAACTGTCCAAGTCCAACCACCTGACACATCTCCATCTAAATTATCAAGTGAGAAACTTCAGTCCTCTGATACAAAAGCTGCTACAGAAGATTCATCCAAACAAGCTGATACTACATCAAATTCCTTACCAGCCTCCTCAGAGTCTTTACATGAATAA | 1263 | 0.4228 | MPENRQVLKNAASNSSGDNIEEAIRRLKINDNRDRDAVAQSTPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPAHVSFATQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVLFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFNHPQHASFGAYPMAGSPTSTVIPASGLPYVGGFPAWSVPRMSYLSGQGIQSYVPPFLSSSQGIIPAQSWNNYMGSMNPAMPTGFLGPNLVYDFMNPSESLSGGQVISSTLPDRPDQPECRYFMNTGTCKYGSDCKFHHPKERIAQSSTNTLGLPVRPGQAVCSYYKIYGICKFGPTCKFDHPVLAIPQNYGLTLPALSLLDSSLINNPRGSSTVQVQPPDTSPSKLSSEKLQSSDTKAATEDSSKQADTTSNSLPASSESLHE* | 421 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops9g00714 | 420 | Gene3D | - | 120 | 169 | - | - | |
Rops9g00714 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Rops9g00714 | 420 | SUPERFAMILY | CCCH zinc finger | 274 | 299 | IPR036855 | GO:0046872 | |
Rops9g00714 | 420 | SUPERFAMILY | CCCH zinc finger | 93 | 118 | IPR036855 | GO:0046872 | |
Rops9g00714 | 420 | Gene3D | - | 46 | 119 | - | - | |
Rops9g00714 | 420 | Gene3D | - | 266 | 347 | - | - | |
Rops9g00714 | 420 | SUPERFAMILY | CCCH zinc finger | 313 | 339 | IPR036855 | GO:0046872 | |
Rops9g00714 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 73 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 92 | 116 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 315 | 339 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 272 | 297 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 161 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 270 | 298 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 162 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | MobiDBLite | consensus disorder prediction | 366 | 420 | - | - | |
Rops9g00714 | 420 | SUPERFAMILY | CCCH zinc finger | 133 | 162 | IPR036855 | GO:0046872 | |
Rops9g00714 | 420 | SUPERFAMILY | CCCH zinc finger | 52 | 74 | IPR036855 | GO:0046872 | |
Rops9g00714 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 313 | 341 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | SMART | c3hfinal6 | 136 | 161 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | SMART | c3hfinal6 | 313 | 340 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | SMART | c3hfinal6 | 270 | 297 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | SMART | c3hfinal6 | 89 | 116 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 89 | 117 | IPR000571 | GO:0046872 | |
Rops9g00714 | 420 | PANTHER | PROTEIN PHOSPHATASE RELATED | 22 | 375 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops9g00714 | Rops-Chr9 | 10571059 | 10575398 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops9g00714 | 1 | 401 | C3H Transcription Factor Family | AT1G04990 | 46.523 | 5.13e-121 | 356 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Rops9g00714 | zf-CCCH | 2.1e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops9g00714 | - | - | vra:106765262 | 750.355 |