Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00678 ATGTACAGAAAGAAGAAGCTAGACTACACATTTTCAAGGTGTGAAGCCAAAGAAAGAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTTCTATGGATATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTTCCTCTGAGCAACAATTCTGGTGCTCAAATGCGCAGTGACCGAAGGGTATCTGTCTTGAGTAATGGTCAAGATCATAACTACAGCCAGCTGGGCAATACCAACACTTGCAGTGTTAGGGATAAGATCATGGCACATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTTGTGGCTAGTTTAGAGGAGTCATGTGCCAAATGTGAAGCCTTGAATGCATCATCAGGGAAGACAGGAACTGGTTCTATAGGTGAAGATCCAGCTTTGGACCAGTTCATGGAGGCTTATTGTGAGATGCTTATCAAGTACGAGCAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCTTTTCAAGAATTGAGTGTCAGCTTAAAGCTCTAGCAGTTTCAACAGACTTTGGTCAAAGTGAATCATCTTCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGATACTCAAGGTGAAGATCAGGAACTAAAAGTGCAGCTTTTGCGCAAGTATAGTGGATATCTAGGAAGCCTCAAGAAGGAGTTTTTAAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGGCAGCAGCTACTAGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAATCCCAAAAGCAAGCACTTGCAGAATCCACAGGCTTAGATCTGAAGCAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCGTTTCCCATGGATGGCATGCCTATGCTTCTTTAA 999 0.4294 MYRKKKLDYTFSRCEAKERGFGGNSCSELSSMDMMNMETNRKFLSLPLSNNSGAQMRSDRRVSVLSNGQDHNYSQLGNTNTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCEALNASSGKTGTGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSTDFGQSESSSQNEVDVHENNLDTQGEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00678 332 SMART HOX_1 238 303 IPR001356 GO:0003677
Rops9g00678 332 Pfam ELK domain 216 237 IPR005539 GO:0003677
Rops9g00678 332 Pfam KNOX2 domain 138 184 IPR005541 GO:0003677|GO:0005634
Rops9g00678 332 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Rops9g00678 332 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Rops9g00678 332 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Rops9g00678 332 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
Rops9g00678 332 CDD homeodomain 248 300 IPR001356 GO:0003677
Rops9g00678 332 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
Rops9g00678 332 SMART ELK_2 216 237 IPR005539 GO:0003677
Rops9g00678 332 SUPERFAMILY Homeodomain-like 238 310 IPR009057 -
Rops9g00678 332 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Rops9g00678 332 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 120 306 - -
Rops9g00678 332 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Rops9g00678 332 Gene3D - 234 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00678 Rops-Chr9 9727450 9731650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00678 71 328 Homeobox Transcription Factor Family AT1G62360 64.875 2.48e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops9g00678 KNOX2 4.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00678 - - gmx:100791704 552.362