Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00658 ATGATGAGGTCCAATGGTTACTTGAAGATGGCTCAGTCTACTGCCGTTGCCAAAGGTGCCACACGCCCAAGCCCGTCCTCCACCCCATCTGATGCTGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCACTTGAGATGGTAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGTACACGCTCATATGGAGACTACTGCCAATTTGCTCGCGGTATTGGGGAGCTTCGCCCGGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGCATGCCCATAG 336 0.5268 MMRSNGYLKMAQSTAVAKGATRPSPSSTPSDAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTRSYGDYCQFARGIGELRPVIRHPRYKTEVCRMVLAGVACP* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00658 111 SUPERFAMILY CCCH zinc finger 54 89 IPR036855 GO:0046872
Rops9g00658 111 FunFam zinc finger CCCH domain-containing protein 15-like 51 90 - -
Rops9g00658 111 MobiDBLite consensus disorder prediction 1 33 - -
Rops9g00658 111 Gene3D - 52 90 - -
Rops9g00658 111 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 58 81 IPR000571 GO:0046872
Rops9g00658 111 MobiDBLite consensus disorder prediction 7 33 - -
Rops9g00658 111 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 111 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00658 Rops-Chr9 9363720 9364055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00658 2 111 C3H Transcription Factor Family AT1G68200 60.504 1.59e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops9g00658 zf-CCCH 1.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00658 K18753 - gmx:100796550 193.356