Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00649 ATGGTAAGAAAACTTCACCTTCATCTTGGTTGCTCCATTCTCACTGAACTTTCTCTGAGGTACGGTTATGACAGTTTCAACATGTATATTAAACAGATTGTGATTGAAGGTTTCAAGAGTTACCGAGAGCAAATCGCCACAGAGGCATTCAGTCCTAAAGTTAACTGTGTTGTTGGTGCTAATGGATCTGGGAAGACAAACTTTTTCCATGCCATTCGTTTTGTGTTGAGTGATCTCTTCCAGACTCTACGCAATGAAGATAGGCATGCACTACTCCATGAAGGAGCTGGACACCAGGTTTTATCTGCATTTGTGGAGATTGTATTCGATAATTCAGACAATCGTATCCCGGTTGACAAGGAGGAAGTGCGCTTGCGCCGGACTATTAGTTTGAAAAAGGATGAGTATTTTCTAGATGGAAAACACATAACAAAAACGGAAGTGATGAATTTATTGGAAAGTGCTGGGTTCTCTCGCTCAAATCCTTATTATGTTGTACAACAAGGAAAGATAGCATCACTAACCTTGATGAAAGACTCCGAACGACTGGATTTGCTGAAGGAAATAGGTGGTACTAGAGTTTATGAGGAGAGGCGTCGTGAAAGTTTGAAAATAATGCAGGAAACTGGTAATAAAAGAAAGCAAATAATCCAAGTTGTACAGTATTTAGATGAGAGGTTGAGGGAACTGGATGAGGAGAAAGAGGAACTTAGAAAATATCAGCAGCTTGACAAGCAGAGAAAATCTTTGGAATATGCTATTTATAACAAAGAAGTTCAAGATGCTCAGCAAAAACTTGCAGAGATTGAAGAAGCTCGTACCAAGGTTTCTGAAACATCAGCAAAGAAGTATAATGATGTTCTTGATGCACATGAGAAATCCAAAGATTTAGAGAATACATTGAAAGATGTAACAAAAGAACTTCAAAACTTTAACAAAGAGAAAGAAGTTATTGAAAAGCGACGAACAGAGGCATTAAAGAAGCACACAGAGCTTGAGCTTGACGTCAAAGACTTACAAGAGAAGATCTCTGGAAATATCCGAGCCAAAGAAGATGCTGCAAGACAACTGGAGATACTGGAGAAAGAAATTCGAGATTCAATGGATGAGCTGGACAAAATCTGTCCATTATACGAGGATCAAGTTAAGAAAGAAAAAGACATTACCAAGCGAATAATGGAGCGTGAGAAGAAACTCAGTATACTTTATCAAAAGCAAGGACGCGCAACGCAGTTTTCAAGTAAAGCTGCTCGTGATAAGTGGCTTCAAAAGGAGATTGATGATCTTGAACGGGTGCTTTCTTCAAACACAGGGCAGGAGCAAAAGCTTATGGAAGAAATTAACCGGCTTAATCGTGAACTACATGACTGCGATGAGAACATTAAGAGCCGTAGATCAGATATTACTACTTTGGAATCTCTCATTGCTCAGTCACGTGAAGGGTTTAATCATCATAAAGTAGAAAGAGACAAGTTACACGATGAGAGGAAGTCCCTATGGGCAAAAGAAAATGAACTTACTGCTGAAATTGATAAGCTGATAGCAGAAGTTGAGAAGGCTGAAAAGAGTCTTGATCATGCAATTCCTGGTGATGTGAGAAGAGGGTTGAATTCAGTTCGGAAGATCTGCAGGGAGTATGACATTTCTGGAGTTCATGGTCCAATTATTGAGTTGCTGAATTGTGATGAAAAGTTTTTCACTGCAGTTGAAGTTACTGCAGGAAACAGCTTATTTCATGTGGTTGTTGAAACTGATGACAAGTCAACCCAGATTATTAGACATCTTAATTCACAGAAAGGTGGCCGAGTTACATTTATTCCACTTAACAGAGTTAAGGCTCCGCGTATCACTTATCCACAGAGTTCTGATGTCATACCTCTTTTAAAGAAATTAAATTTTAAACTTGACTATACTCCCGCATTCAGTCAGGTATTTGCTAGAACAGTTATATGCAAGAACCTAGATGTGGCTTCAAGGGTTGCTCGCACCGATGGTCTGGACTGCATAACTCTGGAAGGTGATCAAGTAAGCAAGAAAGTCTCACAGATAGACCAGAAAATTGACGAACTTGTTGCTGAGCAGCAGAAGATTGATGCCAAGCGTGCTCATGACAAATCGGAGTTGGAACAGCTTAAGCAAGACATTGCTAATTCTAACAAGCAGAAGCAATTGATTTCTAAAGCACTTGCAAAGAAGGAGAAGTCACTTGTGGATGTCCAGAATCAGATTGAACAACTGAAGGCTAGTATGGCAATAAAAAAAGCTGAGATGGGCACAGAGCTCATTGATCATTTGACACCAGAGGAAAAAAAGCTTTTGTCAGATTTGAACCCTGAAATCAAAGACCTTAAAGAGAAGCTTGTTGCTTGCAAGGCTGATCGCATTGAGACTGAAGCACGGAAAGCAGAGCTGGAAACTAATCTAACAACTAACCTTAGGAGAAGAAAACAAGAGTTGGAGGCTGTAATATCATCTGTAGATGCTGACTCATTGGTTGTTGATGCTGAATTGAAGGGGCAGGAACTTAGTGACGCTAAAATATTGGTTGATGATGCATCAGAGCAGCTTAGAAGAGTTTCTGAAAGTATAAATGATCGAACAAGGCATATTAAAAAGATCAAAGATGAAATGAATAAATTGAAGTCTTTGGAGGACGAGTATGAAAGAAAACTTCAGGAAGAAGCAAAGGAATTGGAGCAATTGCTAAGTAAAAAAAATATATATTCTGCTAAAGAAGATGAATATACCAAGAAAATAAGGGAACTGGGCCCATTGACATCAGATGCTTTTGAGACGTACAAACGGAGGAATATTAAAGATTTGAACAAAATGCTACACAGGTGCAATGAGCAGTTGCAACAGTTTAGTCATGTAAACAAGAAAGCACTTGACCAGTACATAAATTTTACTGAACAACGAGAAGAACTTCAGAAAAGGCAAGCTGAACTTGATGCAGGAGATGAGAAAATCAGAGAGCTAATATCAGTGCTAGATCAACGGAAGGATGAATCAATAGAACGCACGTTCAAAGGTGTTGCTAGGCATTTTCGAGAAGTATTTTCTGAACTTGTGCAGGGTGGCCATGGTCATCTAGTTATGATGAAGAAGAAGGATGGTGATCATGATGATGATGACCAAGATGAGGATGGTCCTCGTGAAGCAAATCCAGAGGGAAGAGTAGAAAAGTACATTGGAGTGAAAGTGAAGGTCTCTTTTACTGGACAAGGGGAGACACAGTCCATGAAGCAGTTGTCTGGGGGTCAAAAAACTGTTGTTGCCCTAACACTTATCTTTGCCATACAGCGATGTGATCCAGCCCCCTTTTATCTATTTGATGAGATTGATGCAGCACTGGATCCACAGTACAGAACTGCTGTTGGAAATATGATCCGGCGCCTGGCAGATGTAGCAAACACTCAATTTATCACAACAACATTCCGTCCAGAGCTAGTGAAAGTTGCCGACAAAATATATGGAGTGACACATAAAAACAGGGTCAGCTGGGTTAATGTTGTATCCAAGGAAGATGCACTAGAATTTATTGAGCATGACCAGACGCACAATGCTGAATAA 3573 0.3977 MVRKLHLHLGCSILTELSLRYGYDSFNMYIKQIVIEGFKSYREQIATEAFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQTLRNEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTISLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERLRELDEEKEELRKYQQLDKQRKSLEYAIYNKEVQDAQQKLAEIEEARTKVSETSAKKYNDVLDAHEKSKDLENTLKDVTKELQNFNKEKEVIEKRRTEALKKHTELELDVKDLQEKISGNIRAKEDAARQLEILEKEIRDSMDELDKICPLYEDQVKKEKDITKRIMEREKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLERVLSSNTGQEQKLMEEINRLNRELHDCDENIKSRRSDITTLESLIAQSREGFNHHKVERDKLHDERKSLWAKENELTAEIDKLIAEVEKAEKSLDHAIPGDVRRGLNSVRKICREYDISGVHGPIIELLNCDEKFFTAVEVTAGNSLFHVVVETDDKSTQIIRHLNSQKGGRVTFIPLNRVKAPRITYPQSSDVIPLLKKLNFKLDYTPAFSQVFARTVICKNLDVASRVARTDGLDCITLEGDQVSKKVSQIDQKIDELVAEQQKIDAKRAHDKSELEQLKQDIANSNKQKQLISKALAKKEKSLVDVQNQIEQLKASMAIKKAEMGTELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKADRIETEARKAELETNLTTNLRRRKQELEAVISSVDADSLVVDAELKGQELSDAKILVDDASEQLRRVSESINDRTRHIKKIKDEMNKLKSLEDEYERKLQEEAKELEQLLSKKNIYSAKEDEYTKKIRELGPLTSDAFETYKRRNIKDLNKMLHRCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADVANTQFITTTFRPELVKVADKIYGVTHKNRVSWVNVVSKEDALEFIEHDQTHNAE* 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00649 1190 Coils Coil 287 342 - -
Rops9g00649 1190 PIRSF SMC 674 1180 IPR024704 GO:0005524|GO:0016887
Rops9g00649 1190 PIRSF SMC 27 683 IPR024704 GO:0005524|GO:0016887
Rops9g00649 1190 Coils Coil 503 523 - -
Rops9g00649 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 1166 IPR027417 -
Rops9g00649 1190 Pfam SMC proteins Flexible Hinge Domain 549 660 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Rops9g00649 1190 Coils Coil 433 460 - -
Rops9g00649 1190 Coils Coil 780 800 - -
Rops9g00649 1190 Gene3D - 27 205 IPR027417 -
Rops9g00649 1190 MobiDBLite consensus disorder prediction 1033 1057 - -
Rops9g00649 1190 FunFam Structural maintenance of chromosomes 3 971 1182 - -
Rops9g00649 1190 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 28 679 - -
Rops9g00649 1190 Pfam RecF/RecN/SMC N terminal domain 29 1165 IPR003395 -
Rops9g00649 1190 FunFam Structural maintenance of chromosomes 3 28 224 - -
Rops9g00649 1190 CDD ABC_SMC3_euk 30 193 IPR041741 GO:0005524|GO:0016887
Rops9g00649 1190 Coils Coil 866 911 - -
Rops9g00649 1190 Coils Coil 701 756 - -
Rops9g00649 1190 Gene3D - 971 1182 IPR027417 -
Rops9g00649 1190 SMART SMC_hinge_2 549 661 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Rops9g00649 1190 Coils Coil 350 370 - -
Rops9g00649 1190 Coils Coil 959 979 - -
Rops9g00649 1190 Coils Coil 220 243 - -
Rops9g00649 1190 Gene3D - 621 681 - -
Rops9g00649 1190 Gene3D - 495 620 - -
Rops9g00649 1190 Coils Coil 245 282 - -
Rops9g00649 1190 SUPERFAMILY Smc hinge domain 495 679 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00649 Rops-Chr9 9175900 9209210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00649 924 1150 Structural Maintenance of Chromosomes family AT5G15920 22.650 5.98e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00649 K06669 - gsj:114400455 2040.77