Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00624 ATGGAAGATAAACAAGCAAGAACAAGTGAAGGACAATCCATAAGATGTAAAGCGGCGGTTTGTCACAAACCAGGTGAACCATTGATTATTGAGGAGATTATTGTGGAGCCACCAATGCCTCACGAAGCTAGGATTCGTATCATATGCTCCTCTCTTTGTCACAGTGATATCACTTTTTGGAAGATGCAGGACCCTCCTGCAATTTTTCCAAGAATTCTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTAGGAGAGGATGTAACTGAATTTACAAAAGGAGATGTGGTTGTCCCAATTTTCATCGCTGATTGTGGGGAGTGTTTAGACTGCAAATCAACCAAGAGCAACCTGTGTTCAAAGTTTCCTTTCAAGGTGTCTCCTTGGATGCCTAGATATGCTACCACTAGATTCACAGATCTAAAAGGAGAGATCATACACCATTTCTTGTTTGTTTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCCATCTAACCAAGATTGATCCGGCAATTCCTCCCAACAGGGCATGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGGTCCACAGTAGCTATTTTTGGGCTTGGATGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATGTCAACAAAGAAAAATTTGAAATTGGAAAAAAGTTTGGACTCACAGACTTTGTCCATGCTGGAGAATGTGAAAATAAATCTGTGAGCCAGGTTATCATAGAGATGACTGATGGGGGAGCAGATTACTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCAGGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGGAAAACGGTTGTTTTAGGAGTGGACAAGCCAGGATCCAACTTGAGCATTAGCTGTAATGAGGTCCTTGTTCAAGGGAAAAGTCTCATGGGATCCTTATTTGGAGGACTCAAACCCAAGTCTCATGTACCCATTCTCCTCAAACGCTACATGGACAAGGAACTGAAGTTGGATGAGTTTGTCACACATGAGGTGGAATTTAAGGACATCAATAAAGCTTTTGATTTATTGATTAAAGGTCAGTGTCTTCGATGTGTGATTTGGATGGACAAATGA 1164 0.4296 MEDKQARTSEGQSIRCKAAVCHKPGEPLIIEEIIVEPPMPHEARIRIICSSLCHSDITFWKMQDPPAIFPRILGHEAIGVVESVGEDVTEFTKGDVVVPIFIADCGECLDCKSTKSNLCSKFPFKVSPWMPRYATTRFTDLKGEIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLLSCGVSTGVGAAWRTAGVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDVNKEKFEIGKKFGLTDFVHAGECENKSVSQVIIEMTDGGADYCFECVGMASLVQEAYASCRKGWGKTVVLGVDKPGSNLSISCNEVLVQGKSLMGSLFGGLKPKSHVPILLKRYMDKELKLDEFVTHEVEFKDINKAFDLLIKGQCLRCVIWMDK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00624 387 Gene3D - 188 328 - -
Rops9g00624 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Rops9g00624 387 Pfam Alcohol dehydrogenase GroES-like domain 40 168 IPR013154 -
Rops9g00624 387 Gene3D - 19 380 - -
Rops9g00624 387 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Rops9g00624 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Rops9g00624 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Rops9g00624 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Rops9g00624 387 FunFam Alcohol dehydrogenase 6 19 199 - -
Rops9g00624 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Rops9g00624 387 SUPERFAMILY GroES-like 9 194 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00624 Rops-Chr9 8882286 8885604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00624 42 334 Monolignol Biosynthesis Gene Families AT4G37990 24.832 3.32e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00624 K00121 - gmx:100806887 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00624 9 8882286 8885604 Rops9g00624 9 8882286 8885604 ECH
Rops11g03335 11 63985284 63993631 Rops9g00624 9 8882286 8885604 PCT