Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00607 ATGGATTTGTTTGGGCCAAATGGGAATGAGAATGAGGATTCTTTGCTGTCACCACCTCCAATTGTCCCATCAGATGTTGTACCAGTCAAAGCAGCTCAAGAGCTCCCCCCTGAGCCAGTTAAGAAAAAGGTTTCTTGGGTTCCAATGGCTAGGTCTGGTCTGGGGTCAACGGGAAGGAAGCTGTCTCTTCTCTCTAATTTCCTCAAAGTTAATGTCACTAACCATGATGGACATTTCTACCAGTATAGGGTGTCTTATTCTTTTGTATGTGGACCAAGATATCCGGGTTCACGGAGAAAGCTAATAGACAGGCTTCAGGAAACTTTTGATTCTATGTTGAATGGAAATGACTTCGTGTATGACGATAATGTACGAACATTGTTTACTGTTGGCTCTCTTGCTCAAAACAAGCTTGAGTTCACAGTTGTTCTAGAGGATGTCACATCAAACAGAAATAATGGAAACTGCAGCCGTGATTATCATGGCAGTCCAAATGAGAGTGACAGGAAGAGGATGAAACACCCCTACCGTGCCACGACATACAAAGTTGAGATCAGCTTTGCTGCAAAAATTCCACTACAGGCCATTTTTGATGATTGTAAAGTCACCATAAGAGCGTTTGATATTATATTGAGGAACCATGCTGCTAAGCACCTGCTTGTGCTCCAACCATTCTTCCACCATGATCCCGATGATTTTACAGATATAGGAGGTCATGTTGTGAGATACAGAGGGTTCCATTCCAGTTTTGGAAATACACAAAGTGGCCTGTCTCTTAAGATAGATGTCTCAACTACAATAATTCAGCCTGGGCCTGTGTTGCACTTCTTAATTGGCAATCAAAGTGTGAGAGATCCTTATTCACTTGACTGGGCAAAGGCCAAAAGGACACTAAAAAATCTGAGGATTAAAATCAGCACATCCAATCAAGAGTACAAAATTACAGGGCTTAGTGAACTCCCATGCAAAGAGCAGACATTTCCTCTGAAGAAAAAAGGTACAAGTTACGGTGATGATGTTACTGAGGAAGTCACTGTTTATGATTATTTTGTTAATCATCGTAGCATAGGTCTCTGTCACTCTGCCAATCTTCCATGTATCAATGTTGGCAAGACAAAACGGCCAATTTATTTCCCCCTTGAGCTTTGCTCTTTGGTATCCTTGCAACGTTATACAAAAGCACTTTCCACATTTCAAAGGGCTTCACTTGTGGAGAAGTCCAGGCAGAAGCCCCAAGAAAGGATGAAGGTTTTGTCTGATGCTCTTAAAAGCAGCAATTATGCCTCTGAACCCATGGTTCGCAATCGTGAAATTTCAATAGGCCCTGGTTTTACTCAAGTTGAGGGTCGTGTTTTGCAAGCTCCAAGGCCAACTAAGATACAAAGGTGGGCTGTGGCTAACTTCTGTTCACGCTGTGATGTACAAGGACTTGTGATGGATCTGATTAGATGTGGAGAAATGAAAGGAGTTCTGATAGATCCTCCTTCTAATGTATCTGAAGAAAATTGTCAGTGTAAGTGTGCACCACCAATGGTTAGAGTGGAGAAATTGTTTGAGAACATTCAGTCCAAGTTTGCCTGGGATCCTCCTCAGTTTCTTCTTTGTCTGCTTCCTGAGCAGAAAAACTCTAATCTTTATGGTCCATGGAAGAAGAAGTGTCTTGCTGAATTCGGAATCATTACACAGTGCATATCTCCTACAAGGGTCAACGACCAATATCTTACTAATGTTTTGTTGAAGATCAATGCTAAGCTTGGTGGATTGAATTCATTGTTAAGCATTGAACATTTTCGTTCCATTCCTGTTGTTTCCGAAGTTCCCACCATCATTCTTGGCATGAATGTGTTTCGTGGCTCGCCATGGAAATCTTGTTTTCCTTCAATTGCAGCGGTCATCAGCTCTAGACAATGGCCTCTAATATCAAAATATAGGGCATCTGTCCGTACCCAGGGTCCTCTGCATGAAATGATTGATGACTTGTTCAAGCAAGTGTCTGAAAAGAAGGATGAAGGAATAGTAAGGGAACTTCTGATTGATTTTTATTCAAGTTCAGGGAAGAGAAAACCAGAAAATATAATCATATTCAGGGATGGTGTAAGTGAGTCCCTGTTCAATGGAGTTTTGAACATTGAACTTAGTCAAATCATTGAGGCCTGCAAATTTCTTGATGAAAAGAACCCCAAATTTTTGGTGATCGTTGTGCAAAAGAACCATTACACAAAATTCTTCCAGCATGGATCTCCTGACAATGTGCCTCCTGGAACTGTTGTTGATAATAAAATTTGTCATCCTAGAAATTACGATTTCTACTTATGTGCAAATGCTGGAATGATAGGTAGAAGCAGGCCAATACACTATCATGTTTTGTTAGATGAGATCGGTTTTACTCCTGATGATCTACAGGAGCTTGTCCACTCTTTATCATACGTGAATCAGAGGAGCACCACTGCCACTTCTGATGTTGAACCAATATGCTATGCTCACTTGGCTGCAACTCAGATGAGGCGGTTTATGAAATTTGAGGGCAAATCTGAGACTTCTGTATGTGATTATGGTGGACGCCCTGTCCCTCAGTTGCCCAAATTGAAGAAGAAAGTCCGCAACTCAATGTTCTTTTGTTGA 2622 0.4138 MDLFGPNGNENEDSLLSPPPIVPSDVVPVKAAQELPPEPVKKKVSWVPMARSGLGSTGRKLSLLSNFLKVNVTNHDGHFYQYRVSYSFVCGPRYPGSRRKLIDRLQETFDSMLNGNDFVYDDNVRTLFTVGSLAQNKLEFTVVLEDVTSNRNNGNCSRDYHGSPNESDRKRMKHPYRATTYKVEISFAAKIPLQAIFDDCKVTIRAFDIILRNHAAKHLLVLQPFFHHDPDDFTDIGGHVVRYRGFHSSFGNTQSGLSLKIDVSTTIIQPGPVLHFLIGNQSVRDPYSLDWAKAKRTLKNLRIKISTSNQEYKITGLSELPCKEQTFPLKKKGTSYGDDVTEEVTVYDYFVNHRSIGLCHSANLPCINVGKTKRPIYFPLELCSLVSLQRYTKALSTFQRASLVEKSRQKPQERMKVLSDALKSSNYASEPMVRNREISIGPGFTQVEGRVLQAPRPTKIQRWAVANFCSRCDVQGLVMDLIRCGEMKGVLIDPPSNVSEENCQCKCAPPMVRVEKLFENIQSKFAWDPPQFLLCLLPEQKNSNLYGPWKKKCLAEFGIITQCISPTRVNDQYLTNVLLKINAKLGGLNSLLSIEHFRSIPVVSEVPTIILGMNVFRGSPWKSCFPSIAAVISSRQWPLISKYRASVRTQGPLHEMIDDLFKQVSEKKDEGIVRELLIDFYSSSGKRKPENIIIFRDGVSESLFNGVLNIELSQIIEACKFLDEKNPKFLVIVVQKNHYTKFFQHGSPDNVPPGTVVDNKICHPRNYDFYLCANAGMIGRSRPIHYHVLLDEIGFTPDDLQELVHSLSYVNQRSTTATSDVEPICYAHLAATQMRRFMKFEGKSETSVCDYGGRPVPQLPKLKKKVRNSMFFC* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00607 873 Gene3D - 599 873 IPR036397 GO:0003676
Rops9g00607 873 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 841 - -
Rops9g00607 873 Gene3D - 453 598 - -
Rops9g00607 873 FunFam Protein argonaute 3 600 873 - -
Rops9g00607 873 MobiDBLite consensus disorder prediction 1 22 - -
Rops9g00607 873 ProSiteProfiles PAZ domain profile. 295 387 IPR003100 GO:0005515
Rops9g00607 873 ProSiteProfiles Piwi domain profile. 532 839 IPR003165 GO:0003676
Rops9g00607 873 FunFam Protein argonaute 7 265 391 - -
Rops9g00607 873 SUPERFAMILY PAZ domain 265 427 IPR036085 GO:0005515
Rops9g00607 873 Gene3D paz domain 264 391 - -
Rops9g00607 873 Pfam PAZ domain 279 403 IPR003100 GO:0005515
Rops9g00607 873 Pfam N-terminal domain of argonaute 59 211 IPR032474 -
Rops9g00607 873 SUPERFAMILY Ribonuclease H-like 518 837 IPR012337 -
Rops9g00607 873 CDD PAZ_argonaute_like 270 386 - -
Rops9g00607 873 SMART Piwi_a_2 532 839 IPR003165 GO:0003676
Rops9g00607 873 Pfam Argonaute linker 1 domain 225 267 IPR014811 -
Rops9g00607 873 SMART DUF1785_2 219 271 IPR014811 -
Rops9g00607 873 Pfam Piwi domain 533 839 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00607 Rops-Chr9 8609414 8616365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00607 40 873 Eukaryotic Initiation Factors Gene Family AT5G43810 31.498 5.74e-121 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00607 K11593 - gmx:100779439 1197.19